Review
Abstract
Background: COVID-19 screening is an effective nonpharmaceutical intervention for identifying infected individuals and interrupting viral transmission. However, questions have been raised regarding its effectiveness in controlling the spread of novel variants and its high socioeconomic costs. Therefore, the optimization of COVID-19 screening strategies has attracted great attention.
Objective: This review aims to summarize the evidence and provide a reference basis for the optimization of screening strategies for the prevention and control of COVID-19.
Methods: We applied a methodological framework for scoping reviews and the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews) checklist. We conducted a scoping review of the present publications on the optimization of COVID-19 screening strategies. We searched the PubMed, Web of Science, and Elsevier ScienceDirect databases for publications up to December 31, 2022. English publications related to screening and testing strategies for COVID-19 were included. A data-charting form, jointly developed by 2 reviewers, was used for data extraction according to the optimization directions of the screening strategies.
Results: A total of 2770 unique publications were retrieved from the database search, and 95 abstracts were retained for full-text review. There were 62 studies included in the final review. We summarized the results in 4 major aspects: the screening population (people at various risk conditions such as different regions and occupations; 12/62, 19%), the timing of screening (when the target population is tested before travel or during an outbreak; 12/62, 19%), the frequency of screening (appropriate frequencies for outbreak prevention, outbreak response, or community transmission control; 6/62, 10%), and the screening and detection procedure (the choice of individual or pooled detection and optimization of the pooling approach; 35/62, 56%).
Conclusions: This review reveals gaps in the optimization of COVID-19 screening strategies and suggests that a number of factors such as prevalence, screening accuracy, effective allocation of resources, and feasibility of strategies should be carefully considered in the development of future screening strategies.
doi:10.2196/44349
Keywords
Introduction
SARS-CoV-2 has resulted in >500 million cases of COVID-19 worldwide, causing >6 million deaths, and continues to threaten human health [
, ]. The Omicron variant has become the most dominant variant in the current pandemic, and its insidious transmission makes community spread a big challenge [ , ]. For example, the large-scale Omicron outbreak in Shanghai between March and June 2022 resulted in >600,000 infections, and approximately 90% of them were asymptomatic [ ]. The global spread of the pandemic has had a tremendous impact on the health of susceptible populations. In China, where the older adult population exceeds 26.4 million [ ], the vulnerability of the older adults is heightened, despite the overall low mortality rate of the COVID-19 Omicron subvariant [ , ].Symptom surveillance and voluntary nucleic acid testing were ineffective in response to the insidious transmission of the Omicron variant. Proactive screening of COVID-19 is essential to identify asymptomatic infections and break the transmission chain in a timely manner [
]. Under the dynamic zero policy [ ], residents in epidemic areas received nucleic acid screening tests regularly, and the scope and frequency of the screening were dynamically adjusted in accordance with the epidemic trend. Antigen testing is used as a supplement to nucleic acid testing to improve the screening efficiency [ ]. COVID-19 screening has become a basic prevention and control measure in countries worldwide, although the scope of screening varies [ ]. Different strategies have been developed for the general population [ ], international travelers [ ], and high-risk populations [ ].COVID-19 screening is the rapid identification of potentially infected individuals by testing a massive population to take appropriate measures, such as isolating the patient, providing treatment, and conducting contact tracing. COVID-19 screening primarily involves nucleic acid and antigen tests. Nucleic acid screening relies on polymerase chain reaction (PCR) testing techniques and is the gold standard for the confirmation of infection [
, ], and the test includes 4 steps: sample collection, preservation, transportation, and testing [ ]. The entire process is labor and resource intensive, and each step is important for test accuracy. Antigen screening uses different detection techniques, such as colloidal gold immunochromatography, latex methods, and fluorescence immunochromatography, allowing for quick and easy self-testing. However, antigen testing is less accurate and is often used as a supplement to nucleic acid testing [ , ].To develop a COVID-19 screening strategy, the target population and the timing and frequency of screening should be considered. For mass nucleic acid testing, a pooled sample testing approach is often used to reduce costs and improve detection efficiency. Factors that influence the cost-effectiveness of outbreak control should also be considered when optimizing screening strategies. In this scoping review of published research, we aimed to summarize the evidence and provide a reference basis for the optimization of screening strategies for the prevention and control of COVID-19.
Methods
We followed the methodological framework proposed by Arksey and O’Malley [
] and reported according to the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews) [ ]. The PRISMA-ScR checklist is available in [ ].Search Strategy
The search strategy adopted in this review was ((test* OR screen* OR detect*) AND (polymerase chain reaction OR PCR OR nucleic acid OR antigen) AND (COVID* OR SARS-CoV* OR Omicron OR Severe Acute Respiratory Syndrome Coronavirus 2)) NOT (diagno* OR clinic* OR Gene* OR cell OR protein OR laboratory OR patholog*).
The words related to “testing or screening” were limited to the title field. The words related to “testing methods,” “COVID-19,” and “clinical diagnosis or laboratory process technology or pathology” were also limited to the title or abstract fields. PubMed, Web of Science, and Elsevier ScienceDirect were searched for studies published as of December 31, 2022. The reference lists of eligible studies were reviewed to identify additional studies.
Selection Criteria
The inclusion criteria were as follows: (1) the literature language was English, (2) the disease studied in the publication was COVID-19, and (3) the research articles were related to screening and testing strategies for COVID-19 infection.
The exclusion criteria were as follows: (1) articles not related to COVID-19, (2) duplicates, (3) articles that did not involve screening detection strategies, (4) clinical diagnosis or pathological research articles, (5) technical articles on laboratory testing or testing reagents, (6) environmental detection research articles, and (7) basic theoretical articles on COVID-19 detection techniques. YL and YY screened the literature by reviewing the titles and abstracts. The full-text review was performed by JS, J Hong, KL, and MD, and then, the filtered document was checked again by 1 of these coauthors. Any discrepancies were discussed by YL and YY (
).Inclusion criteria
- Peer review: Peer-reviewed literature
- Article type: Original articles
- Language: English
- Disease: COVID-19
- Content: Screening and testing strategies for COVID-19 infection
Exclusion criteria
- Peer review: Literature not peer reviewed
- Article type: Reviews, meeting articles, comments, and notes
- Language: Non-English
- Disease: Diseases other than COVID-19
- Content: Clinical diagnosis or pathological research; technical articles on laboratory testing or testing reagents; environmental detection research; basic theoretical articles on COVID-19 detection techniques
Data Abstraction
ZZ, YL, and YY determined which variables to extract, and the latter 2 developed and tested the data-charting form using Microsoft Excel. We abstracted data on the last name of the first author, research design, research population, optimization design, testing method, screening strategy, evaluation index, and recommendation. All authors participated in the data abstraction and reconfirmation of the abstraction. YL and YY charted the data, grouped the studies according to the optimization directions of the screening strategies, and summarized the findings.
Results
Overview of Included Studies
A total of 4290 publications were found by the searches conducted, of which 1536 were duplicates, and the titles of the remaining 2770 publications were screened for relevance (
). Subsequently, 476 abstracts were reviewed, and 95 publications received a full-text review. Finally, 62 publications were included in the synthesis (the data-charting form is available in [ - ]).The study populations of the publications were the general population (36/62, 58%), travelers or immigrants (10/62, 16%), people in an organization (8/62, 12%, including workers, health care persons, and students), infected people (3/62, 5%), contacts or suspects (3/62, 5%), vaccinated population (1/62, 2%), and people at gathering activities (1/62, 2%). The optimization designs involved screening the population (12/62, 19%); timing (12/62, 19%); frequency (6/62, 10%); and testing procedure (35/62, 56%), including scenarios for adopting a pooling strategy (10/62, 16%), pool size (19/62, 31%), and pooling approach (18/62, 29%), as shown in
.Optimization of Screening Population
Screening of People With Different Infection Risks
Previous studies tried to optimize screening strategies according to infection risk levels indicated by infection probability, contact with an infected person, probability of exposure, or presence of COVID-19 symptoms (
). Du et al [ ] simulated COVID-19 testing in populations with different severities of clinical symptoms and age groups and compared infection rates and false-positive rates among groups with different strategies. They found that in settings of high infection rate and limited testing capacity, a greater proportion of tests should be allocated to symptomatic individuals. Conversely, in a surveillance scenario characterized by a low infection rate and sufficient testing capacity, the optimal strategy, which involved directing a higher allocation of tests to people aged >50 years, only required 51.5% of available tests [ ]. Likewise, the research by Han et al [ ] supported that symptomatic testing at health care facilities was more beneficial than asymptomatic testing in the community, until most symptomatic individuals had been tested. It was also suggested that conducting additional tests to screen for asymptomatic infections among household members yielded the greatest benefit after fulfilling the demand for symptomatic testing [ ]. Berestizshevsky et al [ ] compared total morbidity, testing efficiency, and infection probability under screening strategies such as no testing and no isolation, symptom monitoring combined with random sampling testing, and symptom monitoring combined with “greedy” testing. Testing and quarantine among symptomatic populations using optimized sampling, which is based on community graphs and population risk factors, results in a 30% to 50% reduction in overall prevalence [ ]. Kumar et al [ ] compared the effectiveness and cost of outbreak control by weekly reverse transcription-PCR (RT-PCR) testing in 100% antigen-negative vaccinated individuals in a high-income country (the United States) and in a low-income country (India). They suggested that in regions with resource-limited vaccination strategies, high-frequency testing is still needed to minimize subsequent outbreaks [ ].Research population | Optimization directions | Testing methods | Strategy | Evaluation index | Study |
General population | Screening population | PCRa and RATb |
|
| Du et al [ | ], 2022
General population | Screening population | RAT |
|
| Han et al [ | ], 2022
General population | Screening population | PCR |
|
| Berestizshevsky et al [ | ], 2021
Vaccinated populations | Screening population | PCR and RAT |
|
| Kumar et al [ | ], 2022
Travelers | Screening population and screening timing | PCR |
|
| Zhou et al [ | ], 2021
People at gathering activities | Screening population | PCR |
|
| Wong et al [ | ], 2022
General population | Screening population | PCR and RAT |
|
| Baik et al [ | ], 2022
Workers | Screening population | PCR |
|
| Sandmann et al [ | ], 2020
College students | Screening population | PCR |
|
| Van Pelt et al [ | ], 2021
Travelers | Screening timing | PCR |
|
| Chowell et al [ | ], 2021
School students | Screening population | PCR and RAT |
|
| Colosi et al [ | ], 2022
School students | Screening population and screening timing | RAT |
|
| Leng et al [ | ], 2022
Health care workers in the nursing home | Screening population | RAT |
|
| Zipfel et al [ | ], 2022
Travelers | Screening timing | PCR and RAT |
|
| Lee et al [ | ], 2022
Travelers | Screening timing | PCR and RAT |
|
| Johansson et al [ | ], 2021
Travelers | Screening timing | PCR, RAT |
|
| Steyn et al [ | ], 2022
Travelers | Screening timing | PCR and RAT |
|
| Kiang et al [ | ], 2021
Travelers | Screening timing | PCR |
|
| Jen et al [ | ], 2022
Travelers | Screening timing and screening frequency | PCR and RAT |
|
| Dickens et al [ | ], 2021
Contacts | Screening frequency | RAT |
|
| Quilty et al [ | ], 2021
Travelers | Screening timing | PCR |
|
| Wells et al [ | ], 2020
Contacts | Screening timing | PCR and RAT |
|
| Foncea et al [ | ], 2022
Infected people | Screening timing | PCR and RAT |
|
| Peng et al [ | ], 2021
General population | Screening frequency | PCR |
|
| Kahanec et al [ | ], 2021
General population | Screening frequency | PCR |
|
| Baker et al [ | ], 2021
Migrant workers | Screening frequency | PCR, RAT |
|
| Koo et al [ | ], 2022
General population | Screening frequency | RAT |
|
| Koo et al [ | ], 2022
aPCR: polymerase chain reaction.
bRAT: rapid antigen test.
cNT-pos: number of true-positive results.
dNT-neg: number of true-negative results.
eNF-pos: number of false-positive results.
fNF-neg: number of false-negative results.
gNmiss: number of missed infections.
hNtest-pos: number of people who test positive.
iPpos: proportion of positive results.
jRt: effective reproduction number (positives to true positives transmission potential from secondary cases).
kNinfected: number of infected people.
lNcases: number of confirmed cases.
mNtest: number of tests.
nRT-PCR: reverse transcription-polymerase chain reaction.
oIR: infection rate.
pR0: basic reproductive number.
qPQTR: postquarantine transmission risk.
Screening of People in Different Regions
also shows the results of optimizing screening strategies in different regions such as medium-risk or high-risk regions and domestic or foreign regions. Zhou et al [ ] compared the total number of infections and daily nucleic acid test loads among the screening strategies and found that the optimal strategy was to test people from medium- and high-risk areas using nucleic acid tests before they traveled. Wong et al [ ] assessed infections based on attendance at an event by applying different strategies: no testing and quarantine in all areas, quarantine of attendees from foreign areas, testing of attendees from mainland China, and testing of all attendees at the event. They found that the strategies of quarantining the attendees from foreign areas and testing all (foreign or local) attendees were effective in controlling the number of infections, and they estimated that the total number of new infections was only 1% higher than the current local prevalence [ ]. Baik et al [ ] simulated the effectiveness of outbreak control in regions with limited resources, such as low- and middle-income countries. They evaluated 3 screening strategies: using PCR to test symptomatic patients in outpatient settings, community-based screening with rapid antigen tests (RATs), and symptom-driven outpatient diagnostic testing using RATs. This showed that RATs would reduce transmission most efficiently when used to test symptomatic individuals in outpatient settings, and to avoid large numbers of unnecessary isolations, mass testing with lateral flow tests (LFTs) should be considered as a screening tool [ ].
Screening of Occupational Populations and Students
COVID-19 screening strategies were assessed and optimized for some specific student and occupational populations (
). Sandmann et al [ ] compared the number of infections, number of tests, and duration of isolation between individuals with and without COVID-19 symptoms living in worker dormitories. Testing all the workers was associated with a reduced transmission of approximately 67 individuals per 1000 tests. However, screening workers with COVID-19-like symptoms in isolation only was associated with a higher risk of transmission in the workplace compared with the strategy of screening all workers [ ]. Zipfel et al [ ] simulated transmission in health care workers using 2 strategies: testing all when positive cases were detected and testing all periodically at predetermined intervals from 1 day to 7 days. The study showed that 38% of hospital-based transmission could be prevented if all staff were tested within 1 day when a positive case occurred, whereas 30% to 78% of transmission could be prevented if daily testing was performed [ ].Van Pelt et al [
] analyzed the number of RT-PCR tests required to identify each true-positive case and the true-positive rate in a student population using strategies such as symptom screening only, nucleic acid test screening of symptomatic students, and nucleic acid test screening of all students. Conducting RT-PCR testing for all students and retesting those with initially negative results can effectively identify cases with a correct rate of 86.9% [ ]. Leng et al [ ] further classified the student population by age and simulated the implementation of daily mass screening or screening after the occurrence of positive cases. The study found that mass antigen screening among students significantly reduced the likelihood of not attending class but often required a large number of tests [ ]. Similarly, Colosi et al [ ] analyzed strategies such as routine testing, symptom-based testing, screening, and quarantine when a positive case was detected and found that weekly testing of 75% of unvaccinated students would reduce the number of cases by 34% in primary schools and 36% in secondary schools.Optimization of Timing of Screening
Timing of Screening for Travelers
To address the risk of outbreak caused by population movement, researchers compared the timing of screening of traveling people (eg, before, during, and after travel;
). Chowell et al [ ] simulated the impact of testing at different times before and after boarding a cruise ship on the cumulative number of infected cases. The study found that testing before boarding, daily testing on board, and maintaining social distancing significantly reduced the possibility of onboard transmission [ ]. Johansson et al [ ] found that PCR testing on the day of departure and isolation at the destination reduced the risk of transmission. Testing on the day of departure reduced the risk of transmission when traveling by 44% to 72% [ ]. Steyn et al [ ] assessed the transmission potential of SARS-CoV-2 and the number of infections by simulating PCR or LFT screening at different times, such as the day before departure, the day after arrival at the destination, and the fourth and fifth days after arrival. It was found that the combination of testing and home isolation could reduce the risk of community outbreaks to approximately 0.01, and using daily LFTs or a combination of LFTs and PCR testing could reduce the risk to levels comparable with or lower than those using PCR testing alone [ ]. Kiang et al [ ] evaluated the cumulative number of days of infection and the number of infections when travelers used PCR or antigen testing at timings such as 3 days before departure, the day of departure, and 5 days after arrival at the destination. The results indicated that nucleic acid testing 3 days before departure reduced the risk of infection during the travel, and the cumulative number of infection days was reduced from 8357 to 5401 days [ ]. Jen et al [ ] compared the morbidity, missed tests, and proportion of asymptomatic and presymptomatic individuals in travelers with different strategies such as PCR testing on arrival and quarantine for 5 days and quarantine for 14 days without testing. It was found that >82% of the cases would progress from the presymptomatic phase to the symptomatic phase during the 5-day quarantine period, and the quarantine time with 2 PCR tests depended on the risk, testing and quarantine strategy, and vaccination status of the country of departure [ ]. On the basis of previous screening strategies for travelers, Lee et al [ ] analyzed transmission potential, infection rates, and subsequent infections for strategies such as testing before traveling, after arrival, or at the end of quarantine and 14 days of quarantine without testing, with a consideration of vaccination factors. It was found that at an incidence rate of 0.4 and a time-dependent reproduction number of 16, testing with a sensitivity of ≥98% and specificity of ≥97% both before traveling and on arrival ensured lower expected transmission in vaccinated than unvaccinated individuals with a quarantine of 14 days [ ]. For entry-exit pandemic prevention, Dickens et al [ ] analyzed the number of unidentified infected persons using the strategies of isolation only; predetection combining entry testing and isolation; and predetection combining entry testing, isolation, and daily testing. The results showed that the risk of transmission was greatly reduced by adopting predetection, which combined entry testing and isolation. During the isolation period, if an RAT was performed every 3 days, only 3% of the infected individuals were unidentified at 7 days and 0.7% at 14 days [ ].Screening Timing in Response to an Outbreak
When an outbreak occurs, the appropriate timing of screening facilitates the identification of infected individuals and helps control the spread of the disease. Several studies have explored the impact of different screening timings on the spread of the pandemic (
). Quilty et al [ ] compared the impact of daily antigen testing of close contacts over 1, 3, 5, 7, 10, or 14 days on the spread of the epidemic. It showed that quarantining for 7 days with an antigen testing on the last day or daily antigen testing for 5 consecutive days without quarantine was effective in reducing the potential for secondary cases [ ]. Wells et al [ ] evaluated the impact of screening timing, such as at the start or end of isolation and during the period of isolation, on the risk of continued transmission after isolation. It was suggested that PCR testing at the start and end of isolation could reduce the risk of continuous transmission and shorten the isolation period from 14 days to 7 days. However, testing only at the start of isolation had no notable effect on reducing the risk of transmission and shortening the isolation period [ ]. Foncea et al [ ] simulated the screening of close contacts at different timing, such as days 1, 2, and 3 after exposure to an infector, and compared the expected days of infection during outbreaks. This suggested that antigen testing should be performed on days 1 and 3 for epidemic prevention and control. Two tests were sufficient to effectively prevent infection, and the effectiveness was equivalent to a 14-day isolation period when personnel compliance was 80% to 90%. If an additional test (PCR or antigen) was performed, it was equivalent to the 14-day isolation period effectiveness when personnel compliance was 90% to 100% [ ]. Peng et al [ ] conducted a similar study to assess the risk of spread after the end of the quarantine period for PCR testing at different timings, such as the days 1, 2, 4, 5 and 6 during the quarantine period. The results showed that PCR or antigen testing at different timings reduced the quarantine period to different degrees without increasing the risk of transmission. Combining testing with shorter quarantine periods is more cost-effective in terms of both time and expenses compared with a 14-day quarantine. For instance, using 3 highly sensitive RT-PCR tests along with a 6-day quarantine yielded a similar risk of transmission as the traditional 14-day quarantine. [ ].Optimization of Screening Frequency
Screening frequency should maximize the effectiveness of screening testing and minimize the related costs. Studies on the impact of different screening frequencies on COVID-19 control in communities or high-density populations are also presented in
. Kahanec et al [ ] found that 14 days after 2 rounds of mass nucleic acid testing, the infection rate decreased by approximately 30% and the basic reproductive number decreased by approximately 0.3. In a simulation study, Koo et al [ ] found that the influence of the test frequency was greater than the maximum test sensitivity (range 0.6-0.8) on the number of infections. The average reduction in infections per day between the 2 testing days was 2.2%, whereas each 1% increase in test frequency reduced infections by an average of 0.43% [ ]. Baker et al [ ] found that if the number of screening tests per day was slightly higher than the daily testing capacity, it would not cause a burden on testing, but more cases could be found and transmission could be reduced more effectively. Koo et al [ ] assessed the impact of biweekly PCR tests or weekly RATs on the number of new infections and infectivity in areas with a high population density (such as workers’ dormitories) and found that biweekly PCR testing (39 new cases per month) was as effective as weekly RATs (33 new cases per month) and could prevent local outbreaks.Optimization of Screening Procedure
The Importance of the Implementation of the Pooling Strategy
Given the huge demand for sampling and testing, it is important to optimize the screening procedure, and the pooling strategy (ie, collecting multiple samples in a pool for testing) has been frequently used. For example, the National Health Commission of China and the Centers for Disease Control and Prevention of America have issued guidelines for pooled sample tests [
, ]. Three issues related to the pooling strategy have been studied: scenarios for adopting the pooling strategy, pool size, and test procedure.Scenarios for Adopting a Pooling Strategy
In general, the decision to adopt a pooling strategy is determined by comparing the average number of pool tests per person with a baseline number of 1 (
[ - ]). A study demonstrated that when the prevalence exceeded 0.1, the average number of tests per person was >1 for pooled testing with a pool size of 32; such pooled testing was no better than the individual test [ ]. The average number of tests per person varied with the pool size. Choosing an optimal pool size can minimize the average number of tests per person. In this case, when the prevalence was <0.07, the pooling strategy could save the need to perform more than half of the tests. When the prevalence was close to or >0.3, the number of pooled tests was close to or exceeded that of the individual test [ ]. A prevalence of 0.3 may be considered as the threshold for performing pooled testing.Pool Size
The optimal pool size can be calculated based on expected positive rate and detection accuracy with the objective of minimizing the number of tests, and the number of tests decreases with decreasing prevalence and increasing pool size. If the accuracy was 100% and the prevalence was 0.001, 0.005, or 0.01, the optimal pool sizes were estimated to be 32, 15, and 10, respectively [
]. There is a certain upper threshold value for the pool size that is limited by testing accuracy ( ).To estimate the optimal pool size, the prevalence (positivity rate or infection rate) must be assumed. It is also assumed that all individuals are independent of each other, and that the probability of infection is uniform. However, in practice, the prevalence remains unknown until the test results are available (
). Pikovski and Bentele [ ] considered the prevalence to be a random variable uniformly distributed between the expected maximum and minimum values substituted in the calculation of the optimal pool size. An optimal pool size of 4, 3, or 5 was acceptable when the prevalence was uniformly distributed between 0 and 0.3 [ ]. In addition, there is heterogeneity and correlation in the probability of infection among people. Fewer tests are needed when individuals in the same pool for testing are homogeneous in terms of age, sex, and other risk characteristics [ - ]. Libin et al [ ] considered that combining pools with several families for testing was more conducive to home isolation. The propagation dynamics simulation found that a family-based pool size of 32 and testing volume of 50,000 per day could achieve the weekly testing of the entire population in Belgium [ ]. A larger optimal pool size is required considering the correlation of individuals in the pool [ ], or even the social graph [ ], in which an edge represents frequent social contacts between 2 persons. Furthermore, Augenblick et al [ ] showed that if the pool size could be adjusted to be optimal with the infection rate at any time, screening with a high testing frequency could quickly reduce the infection rate. The final number of tests may decrease despite the high testing frequency owing to the increasing optimal pool size, that is, “frequency gain” [ ].Test accuracy, including screening sensitivity and specificity, also affects the optimal pool size and the upper limit of the pool size. Bish et al [
] found that the optimal pool size would modestly increase when the sensitivity of the pooled sample test decreased. In the PCR test, the sensitivity would decrease and the specificity would increase in a pooled sample test owing to the dilution effect [ ], which needs to be considered in the calculation of the optimal pool size [ ]. The maximum pool size recommended in previous studies varies from 8 to 30 [ - ]. The sensitivity of the individual test and the influence of the dilution effect of pooling on sensitivity are related to the specific techniques of sampling and testing (such as sampling tools, sample processing reagents, detection instruments, and standardization of operation); therefore, test accuracy is an important determinant for the selection of pool size.Pooling Approach
For the original Dorfman pooling approach, each individual in a positive pool is tested separately. If a pooled sample is negative, then all individuals in the pool are regarded as negative. Several suggestions were made to optimize the pooling approach, which are summarized in
.First, sequential pooling may be used. A positive pool is divided into several subpools, and the samples in the positive subpools are tested individually [
, ]. Binary pooling divides people to be screened into 2 pools, and the positive pool is divided and pooled again until all positive individuals are found [ ]. In the nested pooling strategy, the samples in a positive pool are divided into smaller pools with an optimal number of stages, and the optimal pool size of each stage is calculated according to various measures such as the predicted number of positives and time limit [ , ]. Ng et al [ ] conducted simulations of a household-based sequential pooling approach to optimize a universal testing scheme in Hong Kong. They showed that the household-based sequential pooling approach could rapidly screen people in high-risk groups for COVID-19 infections and quarantine those who tested positive [ ]. Although these approaches reduce the number of tests required, the operability of such strategies for time-critical epidemic control should be carefully assessed.Second, repeated testing of the same pool of samples may be conducted to reduce false negatives of the pooled test [
]. Litvak et al [ ] conducted a second pooled test after reordering and recombining the samples in the negative pools. For the sequential pooled test, some researchers allocated a part of the samples to 2 subpools to improve accuracy [ ].Third, a copy-link optimization strategy may be used to accurately link the results of the pooled test to the individuals in the pool. The primary “copy-link” strategy is matrix pooling [
]. Samples are arranged in the form of a matrix, with each row and column forming a pool, and each sample is tested once in the row pool and once in the column pool. Research on matrix pooling for COVID-19 has only mathematically simulated the number of tests and the accuracy of the pooled sample test. The Dorfman pool test may be more economical when the prevalence is extremely low, whereas matrix pooling may be more economical when the prevalence is relatively high [ ]. Žilinskas et al [ ] broadened the concept of matrices by dividing each sample into 2 pools to create as many links as possible between pools. Zhou and Zhou [ ] applied the copy-link strategy in designing the Pentagram minipool test. Mutesa et al [ ] expanded the 2D matrix to a 3D or multidimensional hypercube, where the number of copies of each sample was split into different planar slices of the hypercube. The subsamples on 1 planar slice of the hypercube were tested in a pool together. Investigators have demonstrated the feasibility of this “hypercube testing strategy” in the laboratory, and field trials are underway in Rwanda and South Africa [ ]. Wu et al [ ] improved the current hypercube testing strategy by calculating the prevalence, edge, and dimension because every edge had a best performance range, and hypercube pooling with edge=3 may not be the optimal strategy in different outbreaks. Daon et al [ ] used a Bayesian model to determine the best combination of pool size, detection steps, repeat detection, and split sample detection to maximize the mutual information between the infection status and testing results. However, this is limited to a simulation analysis.Strategy | Evaluation index | Study |
|
| Cleary et al [ | ], 2021
|
| Hanel and Thurner [ | ], 2020
|
| Litvak et al [ | ], 2020
|
| Cheng et al [ | ], 2021
|
| Millioni and Mortarino [ | ], 2020
|
| Perivolaropoulos and Vlacha [ | ], 2021
|
| Armendáriz et al [ | ], 2021
|
| Rai et al [ | ], 2020
|
| Ng et al [ | ], 2022
|
| Gu et al [ | ], 2021
|
| Kim et al [ | ], 2022
|
| Žilinskas et al [ | ], 2021
|
| Zhou and Zhou [ | ], 2022
|
| Mutesa et al [ | ], 2021
|
| Wu et al [ | ], 2022
|
| Daon et al [ | ], 2021
|
| de Wolff et al [ | ], 2020
aNtest-saving: number of saving tests compared with individual testing.
bNmiss: number of missed infections.
cFNR: false-negative rate.
dNF-pos: number of false-positive results.
eNtest: number of tests.
fNF-neg: number of false-negative results.
gNcases: number of confirmed cases.
hIR: infection rate.
iNinfected: number of infected people.
jFPR: false-positive rate.
kNT-pos: number of false-negative results.
Discussion
Principal Findings
Despite ongoing vaccinations worldwide, COVID-19 is still present and causing outbreaks, and screening remains important. First, SARS-CoV-2 has the potential to mutate, and the transmissibility, pathogenicity, and incubation period of the novel variant remain unknown. Screening facilitates the surveillance and tracking of SARS-CoV-2 novel variants, providing essential information for an appropriate response. In addition, screening helps protect vulnerable populations and reduce the pressure on the health care system. Therefore, the continuous optimization of screening strategies to improve cost-effectiveness and reduce resource consumption is still worthy of our attention in the current global situation of relaxed prevention and control. Furthermore, the development of strategies for screening COVID-19 provides a basis for the prevention and control of novel or re-emerging infectious diseases in the future, particularly respiratory infectious diseases.
In previous studies, researchers have been optimizing the screening strategy for COVID-19 based on the target population, timing, frequency of screening, and testing procedure and providing a scientific basis for COVID-19 screening. Specific strategies are designed and developed for different populations according to risk levels, regions, or occupations; different timing and frequencies (eg, before, during, and after traveling or entry and exit); and different testing procedures (eg, individual or pooled test, pool size, and polling approaches). The conceptual model for developing screening strategies is available in
. As there is a continuous emergence of new variants of SARS-CoV-2, further research is necessary to improve the current screening strategy by addressing the issues on the scale of screening, proper timing and frequency of testing, testing accuracy, and cost-effectiveness.Dynamic Adjustment of Screening Strategies Based on Variations in Prevalence
The design and optimization of any screening strategy are based on disease prevalence during an epidemic as a hypothetical condition. This determines the strictness of the screening strategy, including the screening frequency, time interval, target population, and testing procedures. For example, the selection of pool size in pooled testing depends on the prior prevalence. To apply the optimization plan in practice, the information on real prevalence is important for determining the screening plan at a specific time in a specific area, which may be obtained from the screening results at the same time. Nicholson et al [
], Hamadeh et al [ ], and Chiu and Ndeffo-Mbah [ ] explicitly estimated the real prevalence by statistically correcting the reported data, which can be used in the research and practice of optimizing and adjusting screening strategies over time. Additionally, pandemics are constantly evolving. Screening results can help policy makers and researchers understand current risk levels and trends as well as reflect past screening effects. A feedback mechanism should be created to dynamically adjust the screening strategy according to the screening results. When the number of cases increases rapidly, the stringency of screening should be increased to prevent a larger pandemic outbreak. For example, Yu et al [ ] set several alternative pool sizes and updated the pool size within an alternative range every week according to the changes in prevalence in a simulation study. A dynamic screening plan should be relatively stable, easy to implement, and adaptable to the changing trend of an epidemic or outbreak.Optimizing Screening Strategies by Combining Multiple Testing Methods
Various testing methods have been developed. Some methods are more appropriate than others for different screening processes. Self-detection, such as the use of antigen tests, has been widely promoted. As a supplement to laboratory detection methods, such as PCR, it can effectively save the resources of medical workers for sampling and testing. It has been applied for the screening of both small and large populations. However, the accuracy of the current antigen test is lower than that of the PCR test, with an overall sensitivity of approximately 70% and a specificity of approximately 98%, and its accuracy for asymptomatic patients is lower than that for symptomatic patients [
]. Moreover, there are no guaranteed standardization of sampling for self-detection and compliance with self-isolation after diagnosis. Self-detection is often an alternative when professional testing capabilities are insufficient, and self-detection and laboratory testing complement each other. A few studies have compared laboratory tests with self-tests or combined antigen tests with PCR tests [ , , , , , ]. Yu et al [ ] found that the PCR pooled test tended to be more cost-effective at low prevalence because it allows more people to be tested with existing equipment and quarantines more patients with presymptomatic and asymptomatic infections to prevent future infections. However, a pooled PCR test would cause delays in results and would not facilitate timely quarantine of infected persons and interrupt transmission at a high prevalence. In contrast, high-frequency antigen screening may reverse the epidemic to obtain results quickly and quarantine infected people in a timely manner, despite the large number of false positives in the screening process [ ]. Although the sensitivity of the PCR pooled test may be higher than that of the RAT, there is a problem with a large number of tests leading to delays in reporting. RATs are particularly useful in settings such as schools, workplaces, and mass gatherings with a high frequency owing to their characteristics of lower cost, rapid time to result, and increased accessibility. A combination of laboratory testing and self-detection may maximize the benefit under limited resources, which needs to be studied in the future.Accuracy of Screening Test
Whether an infected person can be identified depends on their infection status after exposure because viral nucleic acid, antigen, antibody, and other biomarkers change with infection time. The accuracy of testing results may also change with time. These characteristics can help in the selection of the appropriate timing for screening and quarantine of close contacts and entry-exit persons with a definite exposure time [
].Screening accuracy is affected by sampling quality and detection accuracy. In China, sampling quality is monitored based on whether human somatic cells are collected from the swab as a laboratory indicator [
]. As the dilution effect caused by pooling is likely to reduce test sensitivity, it is crucial to consider PCR testing with optimal sensitivity and the maximum pool size. The sensitivity may be affected by the sample handling method, selection of the detection kit, and standardization of the detection operation [ ]. The accuracy of screening should be evaluated when designing pooling strategies, which is conducive to the selection of pool size and the credibility of the screening results.Optimization of PCR Testing Procedures to Improve Detection Capacity
Optimizing the nucleic acid detection procedure for the pooled sample test using various approaches reduces the number of tests performed and increases the detection speed and capacity, which can improve the speed of obtaining results for quarantine-infected individuals. The primary Dorfman procedure has been implemented during COVID-19 screening in some areas owing to its convenience and operability. The pool size when screening the entire population in China was 5, 10, or 20 [
, ], and the US Food and Drug Administration authorized 5 pool tests with pool sizes ranging from 3 to 10 [ ]. The optimal selection and dynamic adjustment scheme of the pool size need to be in accordance with the actual prevalence and detection accuracy. The pooling procedure has been improved using a multistage strategy and “copy-link” strategies for higher detection efficiency [ ]. The multistage strategy reduces the number of tests while simultaneously increasing the number of test rounds. The turnaround time from sampling to result reporting may increase, but its operability has not yet been investigated. The “copy-link” strategy not only reduces the amount of testing but also requires only 1 testing stage to locate positive individuals. However, for this strategy, the laboratory requires more complex testing procedures and equipment. It is not feasible to apply “copy-link” strategy to an existing laboratory platform.Accurately Define the Scope of Screening Individuals
A screening strategy for the whole population can effectively control the outbreak, but it also has a significant impact on health care resources and delays the time of transferring cases and contacts to quarantine [
]. Therefore, the occurrence of cases does not imply the need for screening the entire population. In China’s dynamic zero policy, screening of the entire population of an area is often initiated in the early stage of an outbreak and interrupts the spread of COVID-19 [ ]. However, there is a lack of research on when and under what circumstances a full screening should be initiated, and whether specific thresholds for the number of cases or incidence are necessary in the decision-making process. High-risk populations are usually targeted for screening such as people from high-risk areas or countries or people with special occupations. Screening helps to isolate infectious sources to prevent COVID-19 outbreaks [ ].Consider the Implementability of Screening Strategies
Previous studies on the optimization of screening strategies have mainly focused on how to control an epidemic, reduce the risk of transmission, and shorten the isolation period. However, the design and implementation of screening strategies depend on the resources available, which vary greatly among countries or regions. A large-scale screening program is costly and may not only be sustainable owing to limited resources.
Larremore et al [
] raised the meaningful problem of whether the frequency of testing, time to obtaining results, or sensitivity is more important in new crown screening. Their study revealed that effective testing depends largely on the frequency of testing and the speed of obtaining results, whereas the sensitivity of the test is relatively secondary [ ]. This means that the implementation of relatively low-sensitivity PCR pooled tests or antigenic tests can improve the speed of obtaining results, facilitate quarantine of infected individuals, and interrupt transmission. This may be appropriate in areas with high prevalence.Methods of Comparing Different Screening Strategy
When searching for an appropriate screening strategy, the most commonly used method involved using model simulations to evaluate the effectiveness of different screening strategies. For the selection of models to compare different screening strategies, the appropriate model should be based on different situations, populations, and purposes. In addition, real-world disease data are always available during the pandemic, but very few studies have evaluated the effectiveness of different screening strategies from the perspective of real-world data. The conclusions of evaluating the effectiveness of screening strategies using real-world data are more realistic. Model simulations enable a convenient comparison of the effectiveness of different screening strategies for different situations, but they are based on a hypothetical theoretical setting. Furthermore, if the results from the model simulations can be validated using real-world data, the findings of these studies will be more reliable.
Regarding the comparison of different screening strategies, which is the best strategy depends on the actual situation. The selection of a screening strategy in realistic scenarios requires a balanced consideration of the economic costs and effectiveness of controlling the outbreak. Only a few studies reviewed in this paper analyzed cost-effectiveness in a cursory manner; for example, the simple indexes such as cost per test [
] or cost per infection reduced [ ] were used. Furthermore, attention should also be paid to resource consumption, such as medical resources (eg, hospital beds) and quarantine resources (eg, hotel rooms), which determine the feasibility and sustainability of the strategy [ ].Limitations
First, we restricted studies to those publications in English and did not search gray literature and might have missed relevant studies published in other languages and in non-peer-reviewed journals and conference proceedings. Second, we restricted the search terms to the title or abstract field and might have excluded some studies that included the search terms as Medical Subject Headings terms or free text. Third, we did not perform duplicate screening of publications owing to time limitations. However, data extraction was performed by 9 investigators from our team, and 2 investigators in cooperation conducted quality assessments (YL and YY) to ensure consistency. Finally, most publications in this review were simulation studies using mathematical models, which lack accepted criteria for quality evaluation; therefore, literature quality assessments were not performed.
Conclusions
A well-designed and developed COVID-19 screening strategy is conducive to the rapid identification of infected individuals and the control of an epidemic. As new variants continue to emerge, screening strategies should be dynamically adjusted and optimized to achieve expected results. To identify and isolate infected individuals in a timely manner, a screening strategy must produce fast and accurate results. A program is sustainable only when costs can be controlled at the level of available resources. Some key elements for COVID-19 screening strategies are reviewed and discussed, including the screening population, timing and frequency of screening, detection methods, and procedures.
Acknowledgments
This review was supported by the National Key Research and Development Program of China (2022YFC2602900), National Natural Science Foundation of China (81973102), Public Health Talents Training Program of Shanghai Municipality (GWV-10.2-XD21), and Shanghai New Three-year Action Plan for Public Health (GWV-10.1-XK16).
Data Availability
All data generated or analyzed during this study are included in this published article and its supplementary information files.
Authors' Contributions
ZZ and LK jointly conceived and supervised this scoping review. YL, YY, MPW, YC, PPYW, ZZ, and LK designed the methodology. YL and YY led the retrievals and screening of the publications. YL, YY, KL, MD, J Hong, J Huang, JS, XZ, XC, JX, and RY verified the eligibility of the included publications and extracted the relevant information. YL and YY drafted the manuscript. All authors have revised the manuscript and approved the final version.
Conflicts of Interest
None declared.
PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews) checklist.
DOCX File , 38 KBResearch on the optimization of COVID-19 screening strategy.
DOCX File , 41 KBResearch on the optimization of SARS-CoV-2 nucleic acid detection strategy.
DOCX File , 39 KBConceptual model for screening strategy development.
DOCX File , 80 KBReferences
- WHO Coronavirus (COVID-19) dashboard. World Health Organization. 2022. URL: https://covid19.who.int/ [accessed 2022-07-08]
- Murray CJ. COVID-19 will continue but the end of the pandemic is near. Lancet. Jan 2022;399 (10323):417-419. [CrossRef]
- Callaway E. Heavily mutated Omicron variant puts scientists on alert. Nature. Dec 25, 2021;600 (7887):21. [CrossRef] [Medline]
- Garrett N, Tapley A, Andriesen J, Seocharan I, Fisher LH, Bunts L, et al. High rate of asymptomatic carriage associated with variant strain Omicron. medRxiv. Preprint posted online January 14, 2022. [FREE Full text] [CrossRef] [Medline]
- Press conference held on the situation of COVID-19 epidemic. Shanghai Municipal Health Commission. 2022. URL: https://wsjkw.sh.gov.cn/xwfb/20220525/6025a7ee53444a7cb75d840913ee5ef7.html [accessed 2022-07-08]
- The Seventh National Census of the people's republic of China in 2020. National Bureau of Statistics of the People's Republic of China. 2020. URL: http://www.stats.gov.cn/tjsj/pcsj/rkpc/d7c/202111/P020211126523667366751.pdf [accessed 2022-07-08]
- Liu K, Chen Y, Lin R, Han K. Clinical features of COVID-19 in elderly patients: a comparison with young and middle-aged patients. J Infect. Jul 2020;80 (6):e14-e18. [FREE Full text] [CrossRef] [Medline]
- Moghadas SM, Fitzpatrick MC, Sah P, Pandey A, Shoukat A, Singer BH, et al. The implications of silent transmission for the control of COVID-19 outbreaks. Proc Natl Acad Sci U S A. Jul 28, 2020;117 (30):17513-17515. [FREE Full text] [CrossRef] [Medline]
- China coronavirus disease 2019 prevention and control plan (eighth edition). National Health Commission of the People's Republic of China. 2022. URL: http://www.nhc.gov.cn/jkj/s3577/202105/6f1e8ec6c4a540d99fafef52fc86d0f8.shtml [accessed 2022-07-08]
- Guidelines for organizational implementation of coronavirus disease 2019 nucleic acid detection in China (third edition). National Health Commission of the People's Republic of China. 2022. URL: http://www.nhc.gov.cn/yzygj/s7659/202203/b5aaa96dfe1b4f14b19bf2f888a10673.shtml [accessed 2022-07-08]
- Coronavirus (COVID-19) testing. Our World in Data. 2022. URL: https://ourworldindata.org/coronavirus-testing [accessed 2022-07-08]
- Coronavirus disease (COVID-19): travel advice for the general public. World Health Organization. 2021. URL: https://www.who.int/news-room/questions-and-answers/item/coronavirus-disease-covid-19-travel-advice-for-the-general-public [accessed 2022-07-08]
- Testing for COVID-19. Centers for Disease Control and Prevention. URL: https://www.cdc.gov/coronavirus/2019-ncov/testing/index.html [accessed 2022-07-08]
- CDC 2019-Novel Coronavirus (2019-nCoV) real-time RT-PCR diagnostic panel. Centers for Disease Control and Prevention. 2022. URL: https://www.fda.gov/media/134922/download [accessed 2022-07-08]
- Corman VM, Landt O, Kaiser M, Molenkamp R, Meijer A, Chu DK, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Euro Surveill. Jan 2020;25 (3):2000045. [FREE Full text] [CrossRef] [Medline]
- Antigen-detection in the diagnosis of SARS-CoV-2 infection. World Health Organization. 2021. URL: https://www.who.int/publications/i/item/antigen-detection-in-the-diagnosis-of-sars-cov-2infection-using-rapid-immunoassays [accessed 2022-07-08]
- Peeling RW, Olliaro PL, Boeras DI, Fongwen N. Scaling up COVID-19 rapid antigen tests: promises and challenges. Lancet Infect Dis. Sep 2021;21 (9):e290-e295. [CrossRef]
- Arksey H, O'Malley L. Scoping studies: towards a methodological framework. Int J Soc Res Methodol. Feb 2005;8 (1):19-32. [CrossRef]
- Tricco AC, Lillie E, Zarin W, O'Brien KK, Colquhoun H, Levac D, et al. PRISMA extension for scoping reviews (PRISMA-ScR): checklist and explanation. Ann Intern Med. Oct 02, 2018;169 (7):467-473. [FREE Full text] [CrossRef] [Medline]
- Du J, J Beesley L, Lee S, Zhou X, Dempsey W, Mukherjee B. Optimal diagnostic test allocation strategy during the COVID-19 pandemic and beyond. Stat Med. Jan 30, 2022;41 (2):310-327. [FREE Full text] [CrossRef] [Medline]
- Han AX, Girdwood SJ, Khan S, Sacks JA, Toporowski A, Huq N, et al. Strategies for using antigen rapid diagnostic tests to reduce transmission of severe acute respiratory syndrome coronavirus 2 in low- and middle-income countries: a mathematical modelling study applied to Zambia. Clin Infect Dis. Mar 18, 2023;76 (4):620-630. [FREE Full text] [CrossRef] [Medline]
- Berestizshevsky K, Sadzi KE, Even G, Shahar M. Optimization of resource-constrained policies for COVID-19 testing and quarantining. J Commn Netw. Oct 2021;23 (5):326-339. [FREE Full text] [CrossRef]
- Kumar CK, Balasubramanian R, Ongarello S, Carmona S, Laxminarayan R. SARS-CoV-2 testing strategies for outbreak mitigation in vaccinated populations. PLoS One. Jul 13, 2022;17 (7):e0271103. [FREE Full text] [CrossRef] [Medline]
- Zhou YH, Ma K, Xiao P, Ye RZ, Zhao L, Cui XM, et al. An optimal nucleic acid testing strategy for COVID-19 during the spring festival travel rush in mainland China: a modelling study. Int J Environ Res Public Health. Mar 12, 2021;18 (4):1788. [FREE Full text] [CrossRef] [Medline]
- Wong NS, Lee SS, Mitchell KM, Yeoh E, Wang C. Impact of pre-event testing and quarantine on reducing the risk of COVID-19 epidemic rebound: a modelling study. BMC Infect Dis. Jan 24, 2022;22 (1):83. [FREE Full text] [CrossRef] [Medline]
- Baik Y, Cilloni L, Kendall E, Dowdy D, Arinaminpathy N. Symptom-based vs asymptomatic testing for controlling SARS-CoV-2 transmission in low- and middle-income countries: a modelling analysis. Epidemics. Dec 2022;41:100631. [FREE Full text] [CrossRef] [Medline]
- Sandmann FG, White PJ, Ramsay M, Jit M. Optimizing benefits of testing key workers for infection with SARS-CoV-2: a mathematical modeling analysis. Clin Infect Dis. Dec 15, 2020;71 (12):3196-3203. [FREE Full text] [CrossRef] [Medline]
- Zipfel CM, Paul P, Gowler CD, Reddy SC, Stone ND, Jacobs Slifka K, et al. Modeling the effectiveness of healthcare personnel reactive testing and screening for the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Omicron variant within nursing homes. Clin Infect Dis. Oct 03, 2022;75 (Suppl 2):S225-S230. [FREE Full text] [CrossRef] [Medline]
- Van Pelt A, Glick HA, Yang W, Rubin D, Feldman M, Kimmel SE. Evaluation of COVID-19 testing strategies for repopulating college and university campuses: a decision tree analysis. J Adolesc Health. Jan 2021;68 (1):28-34. [FREE Full text] [CrossRef] [Medline]
- Leng T, Hill EM, Thompson RN, Tildesley MJ, Keeling MJ, Dyson L. Assessing the impact of lateral flow testing strategies on within-school SARS-CoV-2 transmission and absences: a modelling study. PLoS Comput Biol. May 27, 2022;18 (5):e1010158. [FREE Full text] [CrossRef] [Medline]
- Colosi E, Bassignana G, Contreras DA, Poirier C, Boëlle PY, Cauchemez S, et al. Screening and vaccination against COVID-19 to minimise school closure: a modelling study. Lancet Infect Dis. Jul 2022;22 (7):977-989. [FREE Full text] [CrossRef] [Medline]
- Chowell G, Dahal S, Bono R, Mizumoto K. Harnessing testing strategies and public health measures to avert COVID-19 outbreaks during ocean cruises. Sci Rep. Jul 29, 2021;11 (1):15482. [FREE Full text] [CrossRef] [Medline]
- Johansson MA, Wolford H, Paul P, Diaz PS, Chen T, Brown CM, et al. Reducing travel-related SARS-CoV-2 transmission with layered mitigation measures: symptom monitoring, quarantine, and testing. BMC Med. May 14, 2021;19 (1):94. [FREE Full text] [CrossRef] [Medline]
- Steyn N, Lustig A, Hendy SC, Binny RN, Plank MJ. Effect of vaccination, border testing, and quarantine requirements on the risk of COVID-19 in New Zealand: a modelling study. Infect Dis Model. Mar 2022;7 (1):184-198. [FREE Full text] [CrossRef] [Medline]
- Kiang MV, Chin ET, Huynh BQ, Chapman LA, Rodríguez-Barraquer I, Greenhouse B, et al. Routine asymptomatic testing strategies for airline travel during the COVID-19 pandemic: a simulation study. Lancet Infect Dis. Jul 2021;21 (7):929-938. [CrossRef]
- Jen GH, Yen AM, Hsu C, Chen SL, Chen TH. A pre-symptomatic incubation model for precision strategies of screening, quarantine, and isolation based on imported COVID-19 cases in Taiwan. Sci Rep. May 11, 2022;12 (1):6053. [FREE Full text] [CrossRef] [Medline]
- Lee FW, Wang J, Wang CJ. A testing and quarantine algorithm for individual international travelers using published data on WHO-approved vaccines and Bayes' theorem. Vaccines (Basel). Jul 06, 2022;10 (6):902. [FREE Full text] [CrossRef] [Medline]
- Dickens BL, Koo JR, Lim JT, Park M, Sun H, Sun Y, et al. Determining quarantine length and testing frequency for international border opening during the COVID-19 pandemic. J Travel Med. Oct 11, 2021;28 (7):taab088. [FREE Full text] [CrossRef] [Medline]
- Quilty BJ, Clifford S, Hellewell J, Russell TW, Kucharski AJ, Flasche S, et al. Centre for the Mathematical Modelling of Infectious Diseases COVID-19 working group. Quarantine and testing strategies in contact tracing for SARS-CoV-2: a modelling study. Lancet Public Health. Mar 2021;6 (3):e175-e183. [FREE Full text] [CrossRef] [Medline]
- Wells CR, Townsend JP, Pandey A, Moghadas SM, Krieger G, Singer B, et al. Optimal COVID-19 quarantine and testing strategies. Nat Commun. Jan 07, 2021;12 (1):356. [FREE Full text] [CrossRef] [Medline]
- Foncea P, Mondschein S, Olivares M. Replacing quarantine of COVID-19 contacts with periodic testing is also effective in mitigating the risk of transmission. Sci Rep. Mar 07, 2022;12 (1):3620. [FREE Full text] [CrossRef] [Medline]
- Peng B, Zhou W, Pettit RW, Yu P, Matos PG, Greninger AL, et al. Reducing COVID-19 quarantine with SARS-CoV-2 testing: a simulation study. BMJ Open. Jul 16, 2021;11 (7):e050473. [FREE Full text] [CrossRef] [Medline]
- Kahanec M, Lafférs L, Schmidpeter B. The impact of repeated mass antigen testing for COVID-19 on the prevalence of the disease. J Popul Econ. Jun 29, 2021;34 (4):1105-1140. [FREE Full text] [CrossRef] [Medline]
- Koo JR, Cook AR, Lim JT, Tan KW, Dickens BL. Modelling the impact of mass testing to transition from pandemic mitigation to endemic COVID-19. Viruses. May 05, 2022;14 (5):967. [FREE Full text] [CrossRef] [Medline]
- Baker CM, Chades I, McVernon J, Robinson AP, Bondell H. Optimal allocation of PCR tests to minimise disease transmission through contact tracing and quarantine. Epidemics. Dec 2021;37:100503. [FREE Full text] [CrossRef] [Medline]
- Koo JR, Dickens BL, Jin SH, Lim JT, Sun YX, Tan KW, et al. Testing strategies to contain COVID-19 in migrant worker dormitories. J Migr Health. 2022;5:100079. [FREE Full text] [CrossRef] [Medline]
- Interim guidance for use of pooling procedures in SARS-CoV-2 diagnostic and screening testing. Centers for Disease Control and Prevention. 2021. URL: https://www.cdc.gov/coronavirus/2019-ncov/lab/pooling-procedures.html [accessed 2022-07-08]
- SARS-CoV-2 nucleic acid 20-to-1 mixture detection technical specification. National Health Commission of the People's Republic of China. 2022. URL: http://www.gov.cn/xinwen/2022-01/19/content_5669285.htm [accessed 2022-07-08]
- Bilder CR, Iwen PC, Abdalhamid B. Pool size selection when testing for severe acute respiratory syndrome Coronavirus 2. Clin Infect Dis. Mar 15, 2021;72 (6):1104-1105. [FREE Full text] [CrossRef] [Medline]
- Aragón-Caqueo D, Fernández-Salinas J, Laroze D. Optimization of group size in pool testing strategy for SARS-CoV-2: a simple mathematical model. J Med Virol. Oct 03, 2020;92 (10):1988-1994. [FREE Full text] [CrossRef] [Medline]
- Regen F, Eren N, Heuser I, Hellmann-Regen J. A simple approach to optimum pool size for pooled SARS-CoV-2 testing. Int J Infect Dis. Dec 2020;100:324-326. [FREE Full text] [CrossRef] [Medline]
- Pikovski A, Bentele K. Pooling of coronavirus tests under unknown prevalence. Epidemiol Infect. Aug 06, 2020;148:e183. [FREE Full text] [CrossRef] [Medline]
- Deckert A, Bärnighausen T, Kyei NN. Simulation of pooled-sample analysis strategies for COVID-19 mass testing. Bull World Health Organ. Oct 01, 2020;98 (9):590-598. [FREE Full text] [CrossRef] [Medline]
- Fernández-Salinas J, Aragón-Caqueo D, Valdés G, Laroze D. Modelling pool testing for SARS-CoV-2: addressing heterogeneity in populations. Epidemiol Infect. Dec 28, 2020;149:e9. [FREE Full text] [CrossRef] [Medline]
- Millioni R, Mortarino C. Informed sequential pooling approach to detect SARS-CoV-2 infection. PLoS One. Dec 30, 2020;15 (12):e0244475. [FREE Full text] [CrossRef] [Medline]
- Libin PJ, Willem L, Verstraeten T, Torneri A, Vanderlocht J, Hens N. Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics. PLoS Comput Biol. Mar 9, 2021;17 (3):e1008688. [FREE Full text] [CrossRef] [Medline]
- Basso LJ, Salinas V, Sauré D, Thraves C, Yankovic N. The effect of correlation and false negatives in pool testing strategies for COVID-19. Health Care Manag Sci. Mar 28, 2022;25 (1):146-165. [FREE Full text] [CrossRef] [Medline]
- Lin YJ, Yu CH, Liu TH, Chang CS, Chen WT. Positively correlated samples save pooled testing costs. IEEE Trans Netw Sci Eng. Jul 1, 2021;8 (3):2170-2182. [CrossRef]
- Augenblick N, Kolstad J, Obermeyer Z, Wang A. Pooled testing efficiency increases with test frequency. Proc Natl Acad Sci U S A. Jan 11, 2022;119 (2):e2105180119. [FREE Full text] [CrossRef] [Medline]
- Bish DR, Bish EK, El-Hajj H, Aprahamian H. A robust pooled testing approach to expand COVID-19 screening capacity. PLoS One. Feb 8, 2021;16 (2):e0246285. [FREE Full text] [CrossRef] [Medline]
- Lakdawalla D, Keeler E, Goldman D, Trish E. Getting Americans back to work (and school) with pooled testing. Schaeffer Center for Health Policy & Economics. URL: https://healthpolicy.usc.edu/research/getting-americans-back-to-work-and- school-with-pooled-testing/ [accessed 2022-07-08]
- Nianogo RA, Emeruwa IO, Gounder P, Manuel V, Anderson NW, Kuo T, et al. Optimal uses of pooled testing for COVID-19 incorporating imperfect test performance and pool dilution effect: an application to congregate settings in Los Angeles County. J Med Virol. Oct 27, 2021;93 (9):5396-5404. [FREE Full text] [CrossRef] [Medline]
- Lohse S, Pfuhl T, Berkó-Göttel B, Rissland J, Geißler T, Gärtner B, et al. Pooling of samples for testing for SARS-CoV-2 in asymptomatic people. Lancet Infect Dis. Nov 2020;20 (11):1231-1232. [CrossRef]
- Bensaada M, Smaali MA, Bahi O, Bouhedjar K, Khelifa F, Sellam F, et al. Improvement of SARS-COV-2 screening using pooled sampling testing in limited RT-qPCR resources. J Virol Methods. Mar 2022;300:114421. [FREE Full text] [CrossRef] [Medline]
- Jeong H, Lee J, Cheon S, Sohn KM, Kim J, Kym S, et al. Experimental and mathematical optimization of a pooling test for detection of SARS-CoV-2 in a population with low viral load. Infect Chemother. Mar 2021;53 (1):118-127. [FREE Full text] [CrossRef] [Medline]
- Cheng CH, Chow CL, Chow WK. A discussion on the minimum required number of tests in two common pooling test methods for SARS-CoV-2. Epidemiol Infect. Aug 03, 2021;149:e179. [FREE Full text] [CrossRef] [Medline]
- Perivolaropoulos C, Vlacha V. A reduction of the number of assays and turnaround time by optimizing polymerase chain reaction (PCR) pooled testing for SARS-CoV-2. J Med Virol. Jul 06, 2021;93 (7):4508-4515. [FREE Full text] [CrossRef] [Medline]
- Armendáriz I, Ferrari PA, Fraiman D, Martínez JM, Menzella HG, Ponce Dawson S. Nested pool testing strategy for the diagnosis of infectious diseases. Sci Rep. Oct 13, 2021;11 (1):18108. [FREE Full text] [CrossRef] [Medline]
- Rai B, Shukla A, Choudhary G, Singh A. Pool testing for COVID-19: suitable splitting procedure and pool size for India. Disaster Med Public Health Prep. Jul 10, 2022;16 (3):913-919. [FREE Full text] [CrossRef] [Medline]
- Ng KS, Hon JM, Chong SC, Cheung HH, Chan J, Lam SC, et al. Implementation of the compulsory universal testing scheme in Hong Kong: mathematical simulations of a household-based pooling approach. Front Public Health. Dec 14, 2022;10:1053873. [FREE Full text] [CrossRef] [Medline]
- Hanel R, Thurner S. Boosting test-efficiency by pooled testing for SARS-CoV-2-formula for optimal pool size. PLoS One. Nov 4, 2020;15 (11):e0240652. [FREE Full text] [CrossRef] [Medline]
- Litvak E, Dentzer S, Pagano M. The right kind of pooled testing for the novel coronavirus: first, do no harm. Am J Public Health. Dec 2020;110 (12):1772-1773. [CrossRef]
- Gu T, Yao L, Meng X, Graff JC, Thomason D, Li J, et al. A cost-effective plan for global testing - an infection rate stratified, algorithm guided, multiple-level, continuously pooled testing strategy. Sci Total Environ. May 15, 2021;765:144251. [FREE Full text] [CrossRef] [Medline]
- Kim EY, Kim J, Sung H, Jo MW. Cost analysis of coronavirus disease 2019 test strategies using pooled reverse transcriptase-polymerase chain reaction technique. J Clin Lab Anal. May 06, 2022;36 (5):e24413. [FREE Full text] [CrossRef] [Medline]
- Žilinskas J, Lančinskas A, Guarracino MR. Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics. Sci Rep. Mar 10, 2021;11 (1):3459. [FREE Full text] [CrossRef] [Medline]
- Zhou D, Zhou M. Mathematical model and optimization methods of wide-scale pooled sample testing for COVID-19. Mathematics. Apr 05, 2022;10 (7):1183. [CrossRef]
- Mutesa L, Ndishimye P, Butera Y, Souopgui J, Uwineza A, Rutayisire R, et al. A pooled testing strategy for identifying SARS-CoV-2 at low prevalence. Nature. Jan 21, 2021;589 (7841):276-280. [FREE Full text] [CrossRef] [Medline]
- Wu TY, Liao YC, Fuh CS, Weng PW, Wang JY, Chen CY, et al. An improvement of current hypercube pooling PCR tests for SARS-CoV-2 detection. Front Public Health. Oct 19, 2022;10:994712. [FREE Full text] [CrossRef] [Medline]
- Daon Y, Huppert A, Obolski U. DOPE: D-optimal pooling experimental design with application for SARS-CoV-2 screening. J Am Med Inform Assoc. Dec 25, 2021;28 (12):2562-2570. [FREE Full text] [CrossRef] [Medline]
- Cleary B, Hay JA, Blumenstiel B, Harden M, Cipicchio M, Bezney J, et al. Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings. Sci Transl Med. May 14, 2021;13 (589):eabf1568. [FREE Full text] [CrossRef] [Medline]
- de Wolff T, Pflüger D, Rehme M, Heuer J, Bittner MI. Evaluation of pool-based testing approaches to enable population-wide screening for COVID-19. PLoS One. Dec 21, 2020;15 (12):e0243692. [FREE Full text] [CrossRef] [Medline]
- Yu J, Huang Y, Shen ZJ. Optimizing and evaluating PCR-based pooled screening during COVID-19 pandemics. Sci Rep. Dec 02, 2021;11 (1):21460. [FREE Full text] [CrossRef] [Medline]
- Yelin I, Aharony N, Tamar ES, Argoetti A, Messer E, Berenbaum D, et al. Evaluation of COVID-19 RT-qPCR test in multi sample pools. Clin Infect Dis. Dec 19, 2020;71 (16):2073-2078. [FREE Full text] [CrossRef] [Medline]
- Kwiatkowski Jr TJ, Zoghbi HY, Ledbetter SA, Ellison KA, Chinault AC. Rapid identification of yeast artificial chromosome clones by matrix pooling and crude lysate PCR. Nucleic Acids Res. Dec 11, 1990;18 (23):7191-7192. [FREE Full text] [CrossRef] [Medline]
- Nicholson G, Lehmann B, Padellini T, Pouwels KB, Jersakova R, Lomax J, et al. Improving local prevalence estimates of SARS-CoV-2 infections using a causal debiasing framework. Nat Microbiol. Jan 31, 2022;7 (1):97-107. [FREE Full text] [CrossRef] [Medline]
- Hamadeh A, Feng Z, Niergarth J, Wong WW. Estimation of COVID-19 period prevalence and the undiagnosed population in Canadian provinces: model-based analysis. JMIR Public Health Surveill. Oct 09, 2021;7 (9):e26409. [FREE Full text] [CrossRef] [Medline]
- Chiu WA, Ndeffo-Mbah ML. Using test positivity and reported case rates to estimate state-level COVID-19 prevalence and seroprevalence in the United States. PLoS Comput Biol. Oct 7, 2021;17 (9):e1009374. [FREE Full text] [CrossRef] [Medline]
- Khalid MF, Selvam K, Jeffry AJ, Salmi MF, Najib MA, Norhayati MN, et al. Performance of rapid antigen tests for COVID-19 diagnosis: a systematic review and meta-analysis. Diagnostics (Basel). Jan 04, 2022;12 (1):110. [FREE Full text] [CrossRef] [Medline]
- Notice on further strengthening the quality management of novel coronavirus nucleic acid sampling. National Health Commission of the People's Republic of China. 2022. URL: http://www.nhc.gov.cn/yzygj/s7659/202206/abf52e7f45b147a99 3a36a2259011f48.shtml [accessed 2022-07-08]
- Pecoraro V, Negro A, Pirotti T, Trenti T. Estimate false-negative RT-PCR rates for SARS-CoV-2. a systematic review and meta-analysis. Eur J Clin Invest. Mar 05, 2022;52 (2):e13706. [FREE Full text] [CrossRef] [Medline]
- Notice on printing and distributing the technical specifications for 10-in-1 pooling detection of novel coronavirus nucleic acids. 202. National Health Commission of the People's Republic of China. 2020. URL: http://www.gov.cn/xinwen/2020-08/19/content_5535756.htm [accessed 2022-07-08]
- Zhou Y, Jiang H, Wang Q, Yang M, Chen Y, Jiang Q. Use of contact tracing, isolation, and mass testing to control transmission of COVID-19 in China. BMJ. Dec 01, 2021;375:n2330. [FREE Full text] [CrossRef] [Medline]
- Poustchi H, Darvishian M, Mohammadi Z, Shayanrad A, Delavari A, Bahadorimonfared A, et al. SARS-CoV-2 antibody seroprevalence in the general population and high-risk occupational groups across 18 cities in Iran: a population-based cross-sectional study. Lancet Infect Dis. Apr 2021;21 (4):473-481. [CrossRef]
- Larremore DB, Wilder B, Lester E, Shehata S, Burke JM, Hay JA, et al. Test sensitivity is secondary to frequency and turnaround time for COVID-19 screening. Sci Adv. Jan 20, 2021;7 (1):eabd5393. [FREE Full text] [CrossRef] [Medline]
- Kong L, Duan M, Shi J, Hong J, Zhou X, Yang X, et al. Optimization of COVID-19 prevention and control measures during the Beijing 2022 Winter Olympics: a model-based study. Infect Dis Poverty. Oct 06, 2022;11 (1):95. [FREE Full text] [CrossRef] [Medline]
Abbreviations
LFT: lateral flow test |
PCR: polymerase chain reaction |
PRISMA-ScR: Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews |
RAT: rapid antigen test |
RT-PCR: reverse transcription-polymerase chain reaction |
Edited by A Mavragani, T Sanchez; submitted 17.11.22; peer-reviewed by W Zhang, M Khazaneha, N Wang; comments to author 07.06.23; revised version received 29.06.23; accepted 21.11.23; published 27.02.24.
Copyright©Yuanhua Liu, Yun Yin, Michael P Ward, Ke Li, Yue Chen, Mengwei Duan, Paulina P Y Wong, Jie Hong, Jiaqi Huang, Jin Shi, Xuan Zhou, Xi Chen, Jiayao Xu, Rui Yuan, Lingcai Kong, Zhijie Zhang. Originally published in JMIR Public Health and Surveillance (https://publichealth.jmir.org), 27.02.2024.
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