This paper is in the following e-collection/theme issue:

Surveillance Systems (466)

Published on in Vol 4, No 3 (2018): Jul-Sept

Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/9876, first published .
Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology

Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology

Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology

Authors of this article:

Lindsay Meyers1 Author Orcid Image ;   Christine C Ginocchio1, 2, 3 Author Orcid Image ;   Aimie N Faucett1 Author Orcid Image ;   Frederick S Nolte4 Author Orcid Image ;   Per H Gesteland5 Author Orcid Image ;   Amy Leber6 Author Orcid Image ;   Diane Janowiak7 Author Orcid Image ;   Virginia Donovan8 Author Orcid Image ;   Jennifer Dien Bard9, 10 Author Orcid Image ;   Silvia Spitzer11 Author Orcid Image ;   Kathleen A Stellrecht12 Author Orcid Image ;   Hossein Salimnia13 Author Orcid Image ;   Rangaraj Selvarangan14 Author Orcid Image ;   Stefan Juretschko15 Author Orcid Image ;   Judy A Daly16 Author Orcid Image ;   Jeremy C Wallentine17 Author Orcid Image ;   Kristy Lindsey18 Author Orcid Image ;   Franklin Moore18 Author Orcid Image ;   Sharon L Reed19 Author Orcid Image ;   Maria Aguero-Rosenfeld20 Author Orcid Image ;   Paul D Fey21 Author Orcid Image ;   Gregory A Storch22 Author Orcid Image ;   Steve J Melnick23 Author Orcid Image ;   Christine C Robinson24 Author Orcid Image ;   Jennifer F Meredith25 Author Orcid Image ;   Camille V Cook1 Author Orcid Image ;   Robert K Nelson1 Author Orcid Image ;   Jay D Jones1 Author Orcid Image ;   Samuel V Scarpino26 Author Orcid Image ;   Benjamin M Althouse27, 28 Author Orcid Image ;   Kirk M Ririe29 Author Orcid Image ;   Bradley A Malin30 Author Orcid Image ;   Mark A Poritz31 Author Orcid Image
Article Authors Cited by (31) Tweetations (36) Metrics

Journals

  1. Scarpino S, Scott J, Eggo R, Clements B, Dimitrov N, Meyers L, Ferrari M. Socioeconomic bias in influenza surveillance. PLOS Computational Biology 2020;16(7):e1007941 View
  2. de Lusignan S, Hoang U, Liyanage H, Yonova I, Ferreira F, Diez-Domingo J, Clark T. Feasibility of Point-of-Care Testing for Influenza Within a National Primary Care Sentinel Surveillance Network in England: Protocol for a Mixed Methods Study. JMIR Research Protocols 2019;8(11):e14186 View
  3. Mommert M, Tabone O, Guichard A, Oriol G, Cerrato E, Denizot M, Cheynet V, Pachot A, Lepape A, Monneret G, Venet F, Brengel-Pesce K, Textoris J, Mallet F. Dynamic LTR retrotransposon transcriptome landscape in septic shock patients. Critical Care 2020;24(1) View
  4. Degeling C, Gilbert G, Tambyah P, Johnson J, Lysaght T. One Health and Zoonotic Uncertainty in Singapore and Australia: Examining Different Regimes of Precaution in Outbreak Decision-Making. Public Health Ethics 2020;13(1):69 View
  5. Meyers L, Dien Bard J, Galvin B, Nawrocki J, Niesters H, Stellrecht K, St. George K, Daly J, Blaschke A, Robinson C, Wang H, Cook C, Hassan F, Dominguez S, Pretty K, Naccache S, Olin K, Althouse B, Jones J, Ginocchio C, Poritz M, Leber A, Selvarangan R. Enterovirus D68 outbreak detection through a syndromic disease epidemiology network. Journal of Clinical Virology 2020;124:104262 View
  6. Couturier M, Bard J. Direct-from-Specimen Pathogen Identification. Clinics in Laboratory Medicine 2019;39(3):433 View
  7. Sobczyk J, Jain S, Sun X, Karris M, Wooten D, Stagnaro J, Reed S. Comparison of Multiplex Gastrointestinal Pathogen Panel and Conventional Stool Testing for Evaluation of Patients With HIV Infection. Open Forum Infectious Diseases 2020;7(1) View
  8. Inagaki A, Kitano T, Nishikawa H, Suzuki R, Onaka M, Nishiyama A, Kitagawa D, Oka M, Masuo K, Yoshida S. The Epidemiology of Admission-Requiring Pediatric Respiratory Infections in a Japanese Community Hospital Using Multiplex PCR. Japanese Journal of Infectious Diseases 2021;74(1):23 View
  9. Probst V, Datyner E, Haddadin Z, Rankin D, Hamdan L, Rahman H, Spieker A, Stewart L, Guevara C, Yepsen E, Schmitz J, Halasa N. Human adenovirus species in children with acute respiratory illnesses. Journal of Clinical Virology 2021;134:104716 View
  10. Park S, Pons-Salort M, Messacar K, Cook C, Meyers L, Farrar J, Grenfell B. Epidemiological dynamics of enterovirus D68 in the United States and implications for acute flaccid myelitis. Science Translational Medicine 2021;13(584) View
  11. Ruzante J, Olin K, Munoz B, Nawrocki J, Selvarangan R, Meyers L, Lin B. Real-time gastrointestinal infection surveillance through a cloud-based network of clinical laboratories. PLOS ONE 2021;16(4):e0250767 View
  12. Nawrocki J, Olin K, Holdrege M, Hartsell J, Meyers L, Cox C, Powell M, Cook C, Jones J, Robbins T, Hemmert A, Ginocchio C. The Effects of Social Distancing Policies on Non-SARS-CoV-2 Respiratory Pathogens. Open Forum Infectious Diseases 2021;8(7) View
  13. Turtle J, Riley P, Ben-Nun M, Riley S, Perkins A. Accurate influenza forecasts using type-specific incidence data for small geographic units. PLOS Computational Biology 2021;17(7):e1009230 View
  14. Galvin B, Jones J, Powell M, Olin K, Jones M, Robbins T. A Hierarchical Genotyping Framework Using DNA Melting Temperatures Applied to Adenovirus Species Typing. International Journal of Molecular Sciences 2022;23(10):5441 View
  15. Timbrook T, Olin K, Spaulding U, Galvin B, Cox C. Epidemiology of Antimicrobial Resistance Among Blood and Respiratory Specimens in the United States Using Genotypic Analysis From a Cloud-Based Population Surveillance Network. Open Forum Infectious Diseases 2022;9(7) View
  16. Probst V, Spieker A, Stopczynski T, Stewart L, Haddadin Z, Selvarangan R, Harrison C, Schuster J, Staat M, McNeal M, Weinberg G, Szilagyi P, Boom J, Sahni L, Piedra P, Englund J, Klein E, Michaels M, Williams J, Campbell A, Patel M, Gerber S, Halasa N. Clinical Presentation and Severity of Adenovirus Detection Alone vs Adenovirus Co-detection With Other Respiratory Viruses in US Children With Acute Respiratory Illness from 2016 to 2018. Journal of the Pediatric Infectious Diseases Society 2022;11(10):430 View
  17. Escudero D, Fernández-Suarez J, Forcelledo L, Balboa S, Fernández J, Astola I, Quindos B, Campos R, Vázquez F, Boga J. Evaluation and Clinical Impact of Biofire FilmArray Pneumonia Panel Plus in ICU-Hospitalized COVID-19 Patients. Diagnostics 2022;12(12):3134 View
  18. Messacar K, Baker R, Park S, Nguyen-Tran H, Cataldi J, Grenfell B. Preparing for uncertainty: endemic paediatric viral illnesses after COVID-19 pandemic disruption. The Lancet 2022;400(10364):1663 View
  19. Palmer T, Benson L, Porucznik C, Gren L. Impact of COVID-19 Social Distancing Mandates on Gastrointestinal Pathogen Positivity: Secondary Data Analysis. JMIR Public Health and Surveillance 2022;8(8):e34757 View
  20. Bentahir M, Barry M, Koulemou K, Gala J. Providing On-Site Laboratory and Biosafety Just-In-Time Training Inside a Box-Based Laboratory during the West Africa Ebola Outbreak: Supporting Better Preparedness for Future Health Emergencies. International Journal of Environmental Research and Public Health 2022;19(18):11566 View
  21. Benedetti G, Krause T, Schneider U, Lisby J, Voldstedlund M, Bang D, Trebbien R, Emborg H. Spotlight influenza: Influenza surveillance before and after the introduction of point-of-care testing in Denmark, season 2014/15 to 2018/19. Eurosurveillance 2021;26(37) View
  22. Wang C, Liu J, Mi Y, Chen J, Bi J, Chen Y. Clinical features and epidemiological analysis of respiratory human adenovirus infection in hospitalized children: a cross-sectional study in Zhejiang. Virology Journal 2021;18(1) View
  23. Rodino K, Peaper D, Kelly B, Bushman F, Marques A, Adhikari H, Tu Z, Marrero Rolon R, Westblade L, Green D, Berry G, Wu F, Annavajhala M, Uhlemann A, Parikh B, McMillen T, Jani K, Babady N, Hahn A, Koch R, Grubaugh N, Rhoads D, McAdam A. Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1. Journal of Clinical Microbiology 2022;60(6) View
  24. Jia P, Liu S, Yang S. Innovations in Public Health Surveillance for Emerging Infections. Annual Review of Public Health 2023;44(1):55 View
  25. Noble B, Jurcic Smith K, Jones J, Galvin B, Timbrook T, Tesic V. Candida auris rates in blood culture on the rise: results of US surveillance. Microbiology Spectrum 2023;11(5) View
  26. Kuzin A, Glushakov R, Parfenov S, Sapozhnikov K, Lazarev A. Development of an artificial intelligence system for the forecasting of infectious diseases. Fundamental and Clinical Medicine 2023;8(3):143 View
  27. Timbrook T, Glancey M, Noble B, Eng S, Heins Z, Hommel B, Tessonneau M, Galvin B, Macalino G, Carroll K. The epidemiology of pediatric outpatient acute respiratory tract infections in the US: a multi-facility analysis of multiplex PCR testing from 2018 to 2023. Microbiology Spectrum 2024;12(1) View
  28. Noble B, Jiudice S, Jones J, Timbrook T. Reemergence of Bordetella parapertussis, United States, 2019–2023. Emerging Infectious Diseases 2024;30(5) View
  29. Park S, Noble B, Howerton E, Nielsen B, Lentz S, Ambroggio L, Dominguez S, Messacar K, Grenfell B. Predicting the impact of non-pharmaceutical interventions against COVID-19 on Mycoplasma pneumoniae in the United States. Epidemics 2024;49:100808 View

Books/Policy Documents

  1. Poritz M, Lingenfelter B. Advanced Techniques in Diagnostic Microbiology. View
  2. Obeta U, Njar V, Etukudoh N, Ejinaka O. AI and IoT-Based Technologies for Precision Medicine. View