Original Paper
Abstract
Background: In response to the SARS-CoV-2 epidemic, a convenient, rapid, and sensitive diagnostic method for detecting COVID-19 is crucial for patient control and timely treatment.
Objective: This study aimed to validate the detection of SARS-CoV-2 with the Pluslife SARS-CoV-2 rapid test kit developed based on a novel thermostatic amplification technique called RNase hybridization-assisted amplification.
Methods: From November 25 to December 8, 2022, patients with suspected or confirmed COVID-19, close contacts, and health care workers at high risk of exposure were recruited from 3 hospitals and 1 university. Respiratory specimens were collected for testing with the Pluslife SARS-CoV-2 rapid test kit and compared with reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and a commercial antigen assay kit. Samples from 1447 cases were obtained from 3 “ready-to-test” scenarios in which samples were collected on site and tested immediately, and samples from 503 cases were obtained from a “freeze-thaw test” scenario in which samples were collected, frozen, and thawed for testing.
Results: Pluslife SARS-CoV-2 rapid testing of samples from the “ready-to-test” scenario was found to be accurate (overall sensitivity and specificity of 98.3% and 99.3%, respectively) and diagnostically useful (positive and negative likelihood ratios of 145.45 and 0.02, respectively). Pluslife SARS-CoV-2 rapid testing of samples from the “freeze-thaw test” scenario was also found to be accurate (overall sensitivity and specificity of 71.2% and 98.6%, respectively) and diagnostically useful (positive and negative likelihood ratios of 51.01 and 0.67, respectively). Our findings demonstrated that the time efficiency and accuracy of the results in a “ready-to-test” scenario were better. The time required from sample preparation to the seeing the result of the Pluslife SARS-CoV-2 rapid test was 10 to 38 minutes, which was substantially shorter than that of RT-qPCR (at least 90 minutes). In addition, the diagnostic efficacy of the Pluslife SARS-CoV-2 rapid test was better than that of a commercial antigen assay kit.
Conclusions: The developed RNase hybridization-assisted amplification assay provided rapid, sensitive, and convenient detection of SARS-CoV-2 infection and may be useful for enhanced detection of COVID-19 in homes, high-risk industries, and hospitals.
doi:10.2196/48107
Keywords
Introduction
According to the World Health Organization, cases of COVID-19 caused by SARS-CoV-2 were reported in several regions in late 2019 and early 2020 [
]. The rapid spread of SARS-CoV-2 posed a major public health and economic hazard. Currently, the primary test used by most laboratories to diagnose COVID-19 is a nucleic acid amplification test using reverse transcription quantitative polymerase chain reaction (RT-qPCR) [ , ]. Although the World Health Organization declared on May 5, 2023, that the COVID-19 outbreak no longer constituted a “public health emergency of international concern”, this merely demonstrates that the hazard can be effectively controlled with current human capacity—it does not mean that the pandemic is over. The COVID-19 epidemic remains a global health threat, and continued efforts to prevent and control the COVID-19 are still necessary.For some low-resource primary health care conditions, the application scenarios of traditional nucleic acid testing are limited, and an assay with detection performance comparable to RT-qPCR and less demanding on the testing environment is needed. For high-traffic areas, such as customs and airports, the time required to obtain RT-qPCR results is too long, so a faster and more accurate test is needed to increase the speed of population screening. Therefore, it is essential to develop a rapid, convenient, and accurate method for detecting SARS-CoV-2 with detection performance comparable to that of RT-qPCR for areas where medical resources are scarce and for scenarios with high foot traffic.
Compared with RT-qPCR, thermostatic amplification technology does not require a temperature rise or fall to achieve nucleic acid amplification, which helps to substantially mitigate the cost of the instrument and speed up the reaction process [
- ]. However, while most of the existing traditional thermostatic amplification techniques can solve the problem of instrument cost and fast amplification speed, they suffer from inadequate stability and sensitivity when directly benchmarked against RT-qPCR. Thermostatic amplification technology has been developing for decades, during which a variety of nucleic acid detection methods have emerged [ ]. RNase hybridization-assisted amplification (RHAM) is a thermostatic amplification technology developed independently by Guangzhou Pluslife Technology with underlying intellectual property rights. The actual performance of this technology is comparable to that of RT-qPCR, and it is more tolerant and compatible. RHAM can extract, amplify, and detect in 1 step without the opening of the cap after amplification, and it requires a simple professional environment and hardware support. The Pluslife SARS-CoV-2 rapid test kit based on this technology is in lyophilized form, which is easy to transport at room temperature and can achieve extraction-free molecular detection.In this study, a field trial of the Pluslife SARS-CoV-2 rapid test kit was conducted at 4 centers, including Guangdong Provincial People’s Hospital, Zhujiang Hospital at Southern Medical University, Guangdong Second Provincial General Hospital, and Guangdong University of Finance and Economics. Based on the gold standard RT-qPCR assay, we evaluated the diagnostic performance of the Pluslife SARS-CoV-2 rapid test kit and compared it with a commercial antigen assay kit by Wondfo Biotech for the diagnosis of SARS-CoV-2.
Methods
Ethical Considerations
The study protocol was approved by the Ethics Review Committee of Guangdong Provincial People’s Hospital (KY2023-067-02).
Candidates
The study population comprised patients with suspected or confirmed COVID-19, close contacts, and high-risk exposed health care workers from 4 centers, including Guangdong Provincial People’s Hospital, Zhujiang Hospital at Southern Medical University, Guangdong Second Provincial General Hospital, and Guangdong University of Finance and Economics, from November 25 to December 8, 2022. Nasal swabs or oropharyngeal swabs were collected for SARS-CoV-2 testing. The flow chart of the study protocol is shown in
. The characteristics of the 2028 candidates who received the Pluslife SARS-CoV-2 rapid test are shown in .Characteristic, n | Guangdong Provincial People’s Hospital (n=1333) | Zhujiang Hospital at Southern Medical University (n=147) | Guangdong Second Provincial General Hospital (n=518) | Guangdong University of Finance and Economics (n=30) | |||||
Population | |||||||||
Medical staff (n=1206) | 985 | 121 | 100 | 0 | |||||
Teachers (n=11) | 0 | 0 | 0 | 11 | |||||
Students (n=8) | 0 | 0 | 0 | 8 | |||||
Logistics staff (n=8) | 0 | 0 | 0 | 8 | |||||
Fever outpatients (n=213) | 205 | 8 | 0 | 0 | |||||
Emergency patients (n=101) | 101 | 0 | 0 | 0 | |||||
Confirmed patients with COVID-19 (n=403) | 0 | 0 | 403 | 0 | |||||
Collection workers | |||||||||
Grassroots workers (n=1) | 0 | 0 | 0 | 1 | |||||
Nurses (n=34) | 21 | 3 | 10 | 0 | |||||
Medical self-collection (n=131) | 10 | 121 | 0 | 0 | |||||
Testing methods | |||||||||
RT-qPCRa (n=1950) | 1291 | 129 | 503 | 27 | |||||
Pluslife rapid test (n=2028) | 1333 | 147 | 518 | 30 | |||||
Antigen test (n=283) | 283 | 0 | 0 | 0 | |||||
Presence of symptoms | |||||||||
Yes (n=213) | 205 | 8 | 0 | 0 | |||||
No (n=1737) | 1086 | 121 | 503 | 27 |
aRT-qPCR: real-time reverse transcription quantitative polymerase chain reaction.
The RT-qPCR Assay
Viral RNA was extracted from oropharyngeal swabs using the liquid proteinase K magnetic bead method. The BioGerm 2019-nCoV assay (BioGerm) was used to detect SARS-CoV-2 RNA with SARS-CoV-2 RNA-dependent RNA polymerase and nucleocapsid genes according to the product instructions. Briefly, 12 μL of the RT-qPCR mixture, 4 μL of the RT-qPCR enzyme mixture, and 4 μL of the ORFlab/N reaction mixture were combined into a 20 µL master mix for each sample well. The master mix was pipetted into each well of a 96-well optical reaction plate. Then, 5 μL each of specimen nucleic acid, positive control, and negative control were added to the master mix. The tubes were closed securely and centrifuged briefly. Amplification was performed with a fluorescent qPCR instrument for 1 cycle at 50 °C for 10 minutes and 95 °C for 5 minutes, followed by 45 cycles at 95 °C for 10 seconds and 55 °C for 40 seconds. The results of the assay were evaluated with a cycling threshold value, where a value <40 for both target genes was defined as a positive result.
Pluslife SARS-CoV-2 Card Test Procedure
First, the comprehensive nucleic acid test was preheated. The entire absorbent tip of the disposable sampling swab was gently inserted into one nostril approximately 1.5 to 2 cm deep and rotated 3 times on the inner wall or rubbed 3 times on the posterior pharyngeal wall and both sides of the pharyngeal-palatal arch. For the “ready-to-test” method, the tip of the disposable sampling swab was twisted against the bottom and side of the nucleic acid releaser tube 10 times while pinching the tip of the disposable sampling swab. For the “freeze-thaw test” method, the collected pharyngeal swabs were placed in a 500 μL sample tube of Youkang virus preservation solution, shaken and mixed, and frozen in a –20°C refrigerator for 24 to 240 hours. The sample tubes were thawed and 150 μL of Youkang virus preservation solution was added to 2 mL of nucleic acid release agent, the caps were screwed on, and the tubes were vortexed and mixed for 5 to 10 seconds or mixed by inverting 10 to 15 times. After that, the procedure was the same for both methods. The nucleic acid–releasing agent solution was poured into the SARS-CoV-2 reaction card sample tube between the 2 injection lines. The protruding curved air pocket on the SARS-CoV-2 reaction card sample tube was pressed down, and the card was held and shaken up and down 10 times. The SARS-CoV-2 response card was inserted into the device, and the “Start Test” button was pressed. The red indicator light indicated a positive SARS-CoV-2 nucleic acid result, and the blue indicator light indicated a negative SARS-CoV-2 nucleic acid result. The specific operation process is illustrated in
.Antigen Test Procedure
An antigen detection kit (Wondfo Biotech) was used to detect the SARS-CoV-2 nucleocapsid antigen in respiratory specimens. This assay device contained 2 precoated antibody lines: a “C” (control) line and a “T” (test) line. The control area was precoated with chicken IgY antibody, and the test area was precoated with SARS-CoV-2 antibody. Color particle–coupled anti–SARS-CoV-2 antibody was used to detect SARS-CoV-2 antigen. In the assay, SARS-CoV-2 antigen in the respiratory specimen interacted with the color particle–coupled anti–SARS-CoV-2 monoclonal antibody to form a colored antigen-antibody complex. The complex migrated across the membrane by capillary action up to the test line, where it was captured by the pre-encapsulated anti–SARS-CoV-2 antibody. If SARS-CoV-2 antigen was present in the respiratory specimen, a colored test line was visible in the result window, and the intensity of the stained test line varied with the amount of SARS-CoV-2 antigen in the specimen. Colored particles conjugated to chicken IgY were used as the control line.
Statistical Analysis
We estimated the minimum sample size using the single group target value method with the following formula:
where n is the sample size; Z1-α/2 and Z1-β are the significance level and the fractional positions of the standard normal distribution of the degree of certainty, respectively; P0 is the clinically acceptable standard of the evaluation index; and PT is the expected value of the evaluation index of the assessment reagent. The positive and negative compliance rates of the assessment reagents and control reagents should reach 80% and 85% clinically, respectively, and the expected positive and negative compliance rates of the assessment reagents and control reagents can reach 90%. The minimum positive and negative sample sizes were estimated to be 137 and 470 cases, respectively, when the significance level α=.05 and the degree of certainty β=.20. Therefore, the minimum total sample size was estimated to be 607 cases. Sensitivity, specificity, positive and negative predictive values, and positive and negative likelihood ratios were calculated using Microsoft Excel 2021 (Microsoft Corp). Sensitivity was calculated as (true positives) / (true positives + false negatives) × 100. Specificity was calculated as (true negatives) / (true negatives + false positives) × 100. Positive predictive value was calculated as (true positives) / (true positives + false positives) × 100. Negative predictive value was calculated as (true negatives) / (true negatives + false negatives) ×100. The positive likelihood ratio was calculated as sensitivity / (1 – specificity). The negative likelihood ratio was calculated as specificity / (1 – sensitivity). P<.05 was considered statistically significant. Figures were constructed using GraphPad Prism 8.0 (GraphPad) and R software (R Foundation for Statistical Computing).
Results
Comparison of the Pluslife Rapid SARS-CoV-2 Detection Kit With RT-qPCR
The results of the Pluslife rapid SARS-CoV-2 test and RT-qPCR in the 4 centers are shown in
. Of 1950 patients tested using RT-qPCR, a total of 1547 (79.3%) were negative and 403 (20.7%) were positive. Of the 1547 negative patients, 1535 (99.2%, 95% CI 98.8%-99.7%) were also negative when tested with the Pluslife rapid SARS-CoV-2 test. Of the 403 positive patients, 318 (78.9%, 95% CI 76.8%-81%) were also positive when tested with the Pluslife rapid SARS-CoV-2 test. The overall compliance rate was 95% (1853/1950; 95% CI 93.9%-96.2%), with a κ coefficient of 0.84 (95% CI 0.82-0.86). The positive predictive value (PPV) was 96.4% (318/330; 95% CI 95.4%-97.3%), and the negative predictive value (NPV) was 94.8% (1535/1620; 95% CI 93.6%-95.9%). Next, we adopted 2 study protocols, namely, the “ready-to-test” and “freeze-thaw test” protocols, for the field trial scenarios, in which Guangdong Provincial People’s Hospital, Zhujiang Hospital at Southern Medical University, and Guangdong University of Finance and Economics were used in the “ready-to-test” scenarios and Guangdong Second Provincial General Hospital in the “freeze-thaw test” scenario. The results of the Pluslife rapid SARS-CoV-2 test and RT-qPCR are shown in . RT-qPCR results were negative for 1332 (92%) and positive for 115 (8%) of 1447 patients. Of the 1332 negative patients, 1323 (99.3%, 95% CI 98.9%-99.8%) were also negative when tested with the Pluslife rapid SARS-CoV-2 test. Of the 115 positive patients, 113 (98.3%, 95% CI 98%-100%) were also positive when tested with the Pluslife rapid SARS-CoV-2 test. The overall compliance rate was 99.2% (1436/1447; 95% CI 98.8%-99.7%), with a κ coefficient of 0.95 (95% CI 0.94-0.96). The PPV was 92.3% (113/122; 95% CI 91.3%-94%), and the NPV was 99.8% (1323/1325; 95% CI 99.6%-100%). The results of the “freeze-thaw test” for the Pluslife rapid SARS-CoV-2 test and RT-qPCR are shown in . A total of 215 (42.7%) of 503 patients received negative RT-qPCR results, and 288 (57.3%) received positive results. Of the 215 negative patients, 212 (98.6%, 95% CI 98%-99.2%) were also negative when tested with the Pluslife rapid SARS-CoV-2 test. Of the 288 patients positive, 205 (71.2%, 95% CI 68.8%-73.5%) were also positive when tested with the Pluslife rapid SARS-CoV-2 test. The overall compliance rate was 82.9% (417/503; 95% CI 81%-84.8%), and the κ coefficient was 0.67 (95% CI 0.64-0.69). The PPV was 98.6% (205/208; 95% CI 97.9%-99.2%), and the NPV was 71.9% (212/295; 95% CI 69.6%-74.2%). These data suggest that the “ready-to-test” scenario was better than the “freeze-thaw test” scenario.Pluslife SARS-CoV-2 rapid test results | RT-qPCR results | Performance | |
Positive (n=403) | Negative (n=1547) | ||
Positive (n=330), n | 318 | 12 | —a |
Negative (n=1620), n | 85 | 1535 | — |
Sensitivity (n=403), n (%, 95% CI) | — | — | 318 (78.9, 76.8-81) |
Specificity (n=1547), n (%, 95% CI) | — | — | 1535 (99.2, 98.8-99.9) |
Overall compliance rate (n=1950), n (%, 95% CI) | — | — | 1853 (95, 93.9-96.2) |
κ (95% CI) | — | — | 0.84 (0.82-0.86) |
Positive predictive value (n=330), n (%, 95% CI) | — | — | 318 (96.4, 95.4-97.3) |
Negative predictive value (n=1620), n (%, 95% CI) | — | — | 1535 (94.8, 93.6-95.9) |
Positive likelihood ratio | — | — | 101.73 |
Negative likelihood ratio | — | — | 0.21 |
aNot applicable.
Pluslife SARS-CoV-2 rapid test results | RT-qPCR results | Performance | |
Positive (n=115) | Negative (n=1332) | ||
Positive (n=122), n | 113 | 9 | —a |
Negative (n=1325), n | 2 | 1323 | — |
Sensitivity (n=115), n (%, 95% CI) | — | — | 113 (98.3, 98-100) |
Specificity (n=1332), n (%, 95% CI) | — | — | 1323 (99.3, 98.9-99.8) |
Overall compliance rate (n=1447), n (%, 95% CI) | — | — | 1436 (99.2, 98.8-99.7) |
κ (95% CI) | — | — | 0.95 (0.94-0.96) |
Positive predictive value (n=122), n (%, 95% CI) | — | — | 113 (92.3, 91.3-94) |
Negative predictive value (n=1325), n (%, 95% CI) | — | — | 1323 (99.8, 99.6-100) |
Positive likelihood ratio | — | — | 145.45 |
Negative likelihood ratio | — | — | 0.02 |
aNot applicable.
Pluslife SARS-CoV-2 rapid test results | RT-qPCR results | Performance | |
Positive (n=288) | Negative (n=215) | ||
Positive (n=208), n | 205 | 3 | —a |
Negative (n=295), n | 83 | 212 | — |
Sensitivity (n=288), n (%, 95% CI) | — | — | 205 (71.2, 68.8-73.5) |
Specificity (n=215), n (%, 95% CI) | — | — | 212 (98.6, 98-99.2) |
Overall compliance rate (n=503), n (%, 95% CI) | — | — | 417 (82.9, 81-84.8) |
κ (95% CI) | — | — | 0.67 (0.64-0.69) |
Positive predictive value (n=208), n (%, 95% CI) | — | — | 205 (98.6, 97.9-99.2) |
Negative predictive value (n=295), n (%, 95% CI) | — | — | 212 (71.9, 69.6-74.2) |
Positive likelihood ratio | — | — | 51.01 |
Negative likelihood ratio | — | — | 0.67 |
aNot applicable.
In addition, we compared the testing time of RT-qPCR and the Pluslife rapid SARS-CoV-2 test in the 4 centers, and the results are shown in
. Among participants with negative nucleic acid test results, the mean testing time for RT-qPCR (534.70, SD 466.94 minutes) was substantially longer than that for the Pluslife rapid SARS-CoV-2 test (35.00, SD 0 minutes). Similarly, among participants with positive nucleic acid test results, the testing time for RT-qPCR (882.20, SD 517.97 minutes) was substantially longer than that for the Pluslife rapid SARS-CoV-2 test (16.49, SD 5.51 minutes). Moreover, similar results were obtained when comparing the testing times obtained using the 2 testing methods for the 4 field trial sites ( ).Testing result | Testing time (min), mean (SD) | P value | ||
Negative | <.001 | |||
RT-qPCR | 534.70 (466.94) | |||
Pluslife SARS-CoV-2 rapid test | 35.00 (0) | |||
Positive | <.001 | |||
RT-qPCR | 882.20 (517.97) | |||
Pluslife SARS-CoV-2 rapid test | 16.49 (5.51) |
Comparison of the Pluslife Rapid SARS-CoV-2 Test and Commercial Antigen Test With the RT-qPCR Nucleic Acid Test
A total of 283 samples that underwent testing using both the commercial antigen test and Pluslife rapid SARS-CoV-2 test were included. RT-qPCR confirmed that there were 93 positive samples and 190 negative samples. The results of the 2 methodological assays compared with the RT-qPCR results are shown in
. The data showed that, compared to the RT-qPCR results, the sensitivity of the commercial antigen test was 88.2% (82/93; 95% CI 86.5%-89.8%) with a specificity of 100%, and the sensitivity of the Pluslife rapid SARS-CoV-2 test was 98.9% (92/93; 95% CI 98.4%-99.4%) with a specificity of 100%.Assay results | RT-qPCR results | Performance | ||
Positive (n=93) | Negative (n=190) | |||
Commercial antigen test | ||||
Positive (n=82), n | 82 | 0 | —a | |
Negative (n=201), n | 11 | 190 | — | |
Sensitivity (n=93), n (%, 95% CI) | — | — | 82 (88.2, 86.5-89.8) | |
Specificity (n=190), n (%) | — | — | 190 (100) | |
Pluslife SARS-CoV-2 rapid test | ||||
Positive (n=92), n | 92 | 0 | — | |
Negative (n=191), n | 1 | 190 | — | |
Sensitivity (n=93), n (%, 95% CI) | — | — | 92 (98.9, 98.4-99.4) | |
Specificity (n=190), n (%) | — | — | 190 (100) |
aNot applicable.
Comparison of the Diagnostic Value of Different Testing Methods and Different Trial Sites
We performed a receiver operating characteristic (ROC) curve analysis to assess the predictive value of the diagnostic variables. The optimal cutoff values and the area under the receiver operating characteristic curve (AUROC) were first calculated for the commercial antigen test and the Pluslife rapid SARS-CoV-2 test. The AUROCs were 0.973 and 0.997 for the commercial antigen test and the Pluslife rapid SARS-CoV-2 test, respectively (
A), indicating the higher diagnostic value of the Pluslife rapid SARS-CoV-2 test. After that, the optimal cutoff values and AUROC of the Pluslife rapid SARS-CoV-2 test were calculated for the different study protocols and for each field trial site. The AUROCs were 0.955, 0.963, and 0.852 for the 4 centers combined, the “ready-to-test” scenario, and the “freeze-thaw test” scenario, respectively ( B-D), indicating that the diagnostic value of testing immediately after field sample collection was higher than that after freezing and thawing samples. The AUROCs of the Pluslife rapid SARS-CoV-2 test for each individual site were 0.959, 1.000, 0.852, and 1.000 for Guangdong Provincial People’s Hospital, Zhujiang Hospital at Southern Medical University, Guangdong Second Provincial General Hospital, and Guangdong University of Finance and Economics, respectively ( ).Discussion
Principal Findings
Molecular testing is currently the standard diagnostic method for confirming SARS-CoV-2 infection [
], and RT-qPCR for SARS-CoV-2 in respiratory specimens is widely used in COVID-19 diagnostic laboratories [ , - ]. The easy-to-use and mass-producible nature of the Pluslife rapid SARS-CoV-2 test allows for timely nucleic acid test results and reduces the burden on laboratories [ ]. Our objective was to evaluate the performance of the Pluslife rapid SARS-CoV-2 test by comparing it with other tests, such as RT-qPCR and antigen tests, through field trials of the Pluslife rapid SARS-CoV-2 test kit at 4 centers.First, our results from the 4 field trial sites revealed that RT-qPCR showed 95% (1853/1950; 95% CI 93.9%-96.2%) compliance with the results of the Pluslife rapid SARS-CoV-2 test. The specificity, sensitivity, concordance, positive predictive value, negative predictive value, positive likelihood ratio, and negative likelihood ratio of the Pluslife rapid SARS-CoV-2 test were high (
). To test the optimal conditions for the Pluslife rapid SARS-CoV-2 test, we adopted the “ready-to-test” and “freeze-thaw test” protocols in the field trial sites. Guangdong Provincial People’s Hospital, Zhujiang Hospital at Southern Medical University, and Guangdong University of Finance and Economics were used as the test sites for the “ready-to-test” scenario, and Guangdong Second Provincial General Hospital was used as the test site for the “freeze-thaw test” scenario. Our results showed that the RT-qPCR results of the “ready-to-test” and “freeze-thaw test” protocols were 99.2% (1436/1447; 95% CI 98.8%-99.7%) and 82.9% (417/503; 95% CI 81%-84.8%), respectively, and the specificity, sensitivity, concordance, positive predictive value, negative predictive value, positive likelihood ratio, and negative likelihood ratio of the SARS-CoV-2 assay were higher with the Pluslife rapid SARS-CoV-2 test. The above results indicated that freezing and thawing samples after collection and then testing with the Pluslife rapid SARS-CoV-2 test kit is likely to cause false-negative test results, while the diagnostic performance of the test is better when the samples are processed in the field immediately, which may be related to the easy degradation of viral RNA after freezing and thawing. In addition, we validated the diagnostic value of the Pluslife rapid SARS-CoV-2 test by ROC curve analysis for the different study protocols and various field trial sites, and the results also showed that the diagnostic value of the test immediately after field collection was higher than that of the test after freezing and thawing the samples. It is well known that RT-qPCR assay results take a longer time to become available [ ]. Our comparison of RT-qPCR and Pluslife rapid SARS-CoV-2 testing times in the 4 centers revealed that the Pluslife rapid SARS-CoV-2 testing time was considerably shorter than the RT-qPCR testing time for both negative and positive results.Rapid antigen testing is now a valuable alternative to RT-qPCR for the diagnosis of SARS-CoV-2 infection because of its simplicity, speed, low cost, and lack of a need for special equipment or skills [
, ]. However, since viral antigens are expressed when the virus is in active replication, the antigen test is more suitable for the acute infection period, and the accuracy of the COVID-19 antigen test is relatively high for the suspected population within 7 days of the onset of symptoms [ , ]. Therefore, there is a need to develop a test that covers a long period and is fast, accurate, and convenient, which is exactly what the Pluslife rapid SARS-CoV-2 test offers. To compare the diagnostic performance of the Pluslife rapid SARS-CoV-2 test with a commercial antigen test, we compared the 2 assays with RT-qPCR in a field trial scenario at Guangdong Provincial People’s Hospital, and the results showed that the sensitivity of the antigen and Pluslife rapid SARS-CoV-2 tests were 88.2% (82/93; 95% CI 86.5%-89.8%) and 98.9% (92/93; 95% CI 98.4%-99.4%), respectively. Thus, the positive detection rate of the Pluslife rapid SARS-CoV-2 test was increased by 10.8% (10/93; 95% CI 9.2%-12.4%) compared to the commercial antigen test. In addition, we validated the diagnostic value of these 2 tests by ROC curve analysis, and the results showed a higher diagnostic value for SARS-CoV-2 with the Pluslife rapid SARS-CoV-2 test than with the antigen test. Therefore, although the detection time of the Pluslife rapid SARS-CoV-2 test is slightly longer than that of the antigen test, the diagnostic performance of the Pluslife rapid SARS-CoV-2 test for SARS-CoV-2 is superior to that of the antigen test.However, there are some limitations to our study. First, because most of the samples were collected by health care workers in the 4 centers, it was not possible to compare the effects of the 2 sampling methods, namely, nasal swabs and oropharyngeal swabs, on the performance of the Pluslife rapid SARS-CoV-2 test. Second, because antigen testing was only performed in a subset of patients in the fever clinic of Guangdong Provincial People’s Hospital, the number of samples for which both the Pluslife rapid SARS-CoV-2 test and antigen test were performed was small.
Conclusion
In conclusion, our multicenter field trial showed that, based on the gold standard RT-qPCR assay, the specificity, sensitivity, concordance, positive predictive value, negative predictive value, positive likelihood ratio, and negative likelihood ratio of the Pluslife rapid SARS-CoV-2 kit were high, and the “ready-to-test” assay conditions were optimal. In addition, the detection time of the Pluslife rapid SARS-CoV-2 test was substantially shorter than that of RT-qPCR, which helps to reduce laboratory pressure and time costs with better performance in the detection of SARS-CoV-2. Furthermore, when compared with the antigen test, we found that the diagnostic performance of the Pluslife rapid SARS-CoV-2 test was better for SARS-CoV-2 with similar detection times. Therefore, under “ready-to-test” assay conditions, the Pluslife rapid SARS-CoV-2 test can be used as a fast, convenient, and accurate method for detecting SARS-CoV-2 with a detection performance comparable to that of RT-qPCR, offering significant application value for grassroots level facilities with poor medical conditions, special application scenarios (eg, traffic checkpoints), and easy home testing, thus reducing pressure on medical institutions.
Acknowledgments
This research was funded by the 2023 Guangdong Provincial Special Project on Prevention and Treatment of Novel Coronavirus Infection, China (grant 2023B1111010003).
Data Availability
The data sets generated and analyzed during this study are not publicly available due to participant privacy concerns but are available from the corresponding author on reasonable request.
Authors' Contributions
DZ conceptualized the study and contributed to the methodology, validation, investigation, and writing and revising of the manuscript. JH contributed to the methodology, formal analysis, and revising of the manuscript. BH, D Chen, and XS contributed to the methodology, validation, investigation, and revising of the manuscript. JC, HZ, and AC contributed to the validation and investigation. D Cao and TH supervised the study and contributed to the writing and revising of the manuscript. TH procured resources.
Conflicts of Interest
None declared.
Pluslife SARS-CoV-2 card test procedure.
PDF File (Adobe PDF File), 463 KBComparison of the testing times of the Pluslife SARS-CoV-2 rapid test and real-time reverse transcription quantitative polymerase chain reaction (RT-qPCR) at Guangdong Provincial People's Hospital, Zhujiang Hospital at Southern Medical University, Guangdong Second Provincial General Hospital, and Guangdong University of Finance and Economics.
DOCX File , 17 KBReceiver operating characteristic curves predicting the diagnostic value of the Pluslife SARS-CoV-2 rapid test at (A) Guangdong Provincial People’s Hospital, (B) Zhujiang Hospital at Southern Medical University, (C) Guangdong Second Provincial General Hospital, and (D) Guangdong University of Finance and Economics. AUC: area under the curve.
PDF File (Adobe PDF File), 282 KBReferences
- Zhou P, Yang X, Wang X, Hu B, Zhang L, Zhang W, et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. Mar 2020;579(7798):270-273. [FREE Full text] [CrossRef] [Medline]
- Corman VM, Landt O, Kaiser M, Molenkamp R, Meijer A, Chu DK, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Euro Surveill. Jan 2020;25(3):2000045. [FREE Full text] [CrossRef] [Medline]
- Sharfstein JM, Becker SJ, Mello MM. Diagnostic testing for the novel coronavirus. JAMA. Apr 21, 2020;323(15):1437-1438. [CrossRef] [Medline]
- Baek YH, Um J, Antigua KJC, Park J, Kim Y, Oh S, et al. Development of a reverse transcription-loop-mediated isothermal amplification as a rapid early-detection method for novel SARS-CoV-2. Emerg Microbes Infect. Dec 2020;9(1):998-1007. [FREE Full text] [CrossRef] [Medline]
- Jiang M, Pan W, Arasthfer A, Fang W, Ling L, Fang H, et al. Development and validation of a rapid, single-step reverse transcriptase loop-mediated isothermal amplification (RT-LAMP) system potentially to be used for reliable and high-throughput screening of COVID-19. Front Cell Infect Microbiol. 2020;10:331. [FREE Full text] [CrossRef] [Medline]
- Yan C, Cui J, Huang L, Du B, Chen L, Xue G, et al. Rapid and visual detection of 2019 novel coronavirus (SARS-CoV-2) by a reverse transcription loop-mediated isothermal amplification assay. Clin Microbiol Infect. Jun 2020;26(6):773-779. [FREE Full text] [CrossRef] [Medline]
- Broughton JP, Deng X, Yu G, Fasching CL, Servellita V, Singh J, et al. CRISPR-Cas12-based detection of SARS-CoV-2. Nat Biotechnol. Jul 2020;38(7):870-874. [FREE Full text] [CrossRef] [Medline]
- Wei Z, Wang X, Feng H, Ji F, Bai D, Dong X, et al. Isothermal nucleic acid amplification technology for rapid detection of virus. Crit Rev Biotechnol. May 2023;43(3):415-432. [CrossRef] [Medline]
- Tahamtan A, Ardebili A. Real-time RT-PCR in COVID-19 detection: issues affecting the results. Expert Rev Mol Diagn. May 2020;20(5):453-454. [FREE Full text] [CrossRef] [Medline]
- LeBlanc JJ, Gubbay JB, Li Y, Needle R, Arneson SR, Marcino D, et al. Real-time PCR-based SARS-CoV-2 detection in Canadian laboratories. J Clin Virol. Jul 2020;128:104433. [FREE Full text] [CrossRef] [Medline]
- Tang Y, Schmitz JE, Persing DH, Stratton CW. Laboratory diagnosis of COVID-19: current issues and challenges. J Clin Microbiol. May 26, 2020;58(6):e00512-20. [FREE Full text] [CrossRef] [Medline]
- van Kasteren PB, van der Veer B, van den Brink S, Wijsman L, de Jonge J, van den Brandt A, et al. Comparison of seven commercial RT-PCR diagnostic kits for COVID-19. J Clin Virol. Jul 2020;128:104412. [FREE Full text] [CrossRef] [Medline]
- Berlin DA, Gulick RM, Martinez FJ. Severe Covid-19. N Engl J Med. Dec 17, 2020;383(25):2451-2460. [CrossRef] [Medline]
- Lambert-Niclot S, Cuffel A, Le Pape S, Vauloup-Fellous C, Morand-Joubert L, Roque-Afonso A, et al. Evaluation of a rapid diagnostic assay for detection of SARS-CoV-2 antigen in nasopharyngeal swabs. J Clin Microbiol. Jul 23, 2020;58(8):e00977-20. [FREE Full text] [CrossRef] [Medline]
- Sheridan C. Fast, portable tests come online to curb coronavirus pandemic. Nat Biotechnol. May 2020;38(5):515-518. [CrossRef] [Medline]
- Scohy A, Anantharajah A, Bodéus M, Kabamba-Mukadi B, Verroken A, Rodriguez-Villalobos H. Low performance of rapid antigen detection test as frontline testing for COVID-19 diagnosis. J Clin Virol. Aug 2020;129:104455. [FREE Full text] [CrossRef] [Medline]
Abbreviations
AUROC: area under the receiver operating characteristic curve |
RHAM: RNase hybridization-assisted amplification |
ROC: receiver operating characteristic |
RT-qPCR: real-time reverse transcription quantitative polymerase chain reaction |
Edited by A Mavragani, T Sanchez; submitted 11.04.23; peer-reviewed by KH Chan, N Xia; comments to author 08.06.23; revised version received 28.06.23; accepted 17.10.23; published 14.11.23.
Copyright©Dandan Zhu, Jing Huang, Bei Hu, Donglin Cao, Dingqiang Chen, Xinqiang Song, Jialing Chen, Hao Zhou, Aiqun Cen, Tieying Hou. Originally published in JMIR Public Health and Surveillance (https://publichealth.jmir.org), 14.11.2023.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Public Health and Surveillance, is properly cited. The complete bibliographic information, a link to the original publication on https://publichealth.jmir.org, as well as this copyright and license information must be included.